Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96915 | Canola | nucleus | 47.13 | 93.67 |
| CDY61797 | Canola | nucleus | 63.06 | 88.39 |
| CDY69566 | Canola | nucleus | 31.21 | 17.95 |
| CDY18719 | Canola | cytosol | 52.23 | 8.05 |
| CDX81217 | Canola | nucleus | 50.32 | 8.0 |
| CDY21580 | Canola | cytosol, nucleus, plastid | 47.77 | 7.51 |
| CDX69907 | Canola | nucleus | 47.77 | 7.45 |
| CDY13771 | Canola | cytosol, nucleus, plastid | 42.68 | 7.25 |
| CDX76935 | Canola | nucleus | 42.04 | 6.97 |
| CDY25585 | Canola | nucleus | 42.04 | 6.67 |
| CDX89451 | Canola | nucleus | 41.4 | 6.32 |
| CDX95894 | Canola | cytosol | 30.57 | 5.63 |
| CDX92108 | Canola | cytosol | 30.57 | 5.63 |
| CDY22778 | Canola | nucleus | 31.21 | 5.33 |
| CDY58036 | Canola | nucleus | 31.21 | 5.33 |
| CDY28897 | Canola | nucleus | 28.66 | 4.61 |
| CDY07431 | Canola | nucleus | 28.03 | 4.56 |
| CDY12637 | Canola | nucleus | 29.3 | 4.45 |
| CDY01799 | Canola | nucleus | 28.03 | 4.29 |
| CDY51184 | Canola | nucleus | 28.03 | 4.29 |
| CDX96099 | Canola | nucleus | 29.3 | 3.66 |
| CDX92455 | Canola | cytosol | 0.0 | 0.0 |
| CDY45590 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:A0A078D2D2 | EnsemblPlants:CDX81478 | ProteinID:CDX81478 | ProteinID:CDX81478.1 | InterPro:CG-1_dom |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00135091001 | InterPro:IPR005559 | PFAM:PF03859 | PFscan:PS51437 |
| PANTHER:PTHR23335 | PANTHER:PTHR23335:SF12 | SMART:SM01076 | UniParc:UPI0004EEB89F | : | : |
Description
BnaC02g17820D
Coordinates
chrLK031825:+:199935..200821
Molecular Weight (calculated)
18292.9 Da
IEP (calculated)
6.390
GRAVY (calculated)
-0.364
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVTLALPH ESETESVMFF MCLFPLIQTP TTNSSMSLLD LKGGLIRCAQ NSKLSDSSLL IRFNDSTDFD ELTEPVSPLH SFQVLRYFRK DGHNWRKKKD
101: GKTVKEAHEK LKVGSIDVLH CYYAHEEDNE NFQRRCYWTL EQELMHVVFV QYLEVKV
101: GKTVKEAHEK LKVGSIDVLH CYYAHEEDNE NFQRRCYWTL EQELMHVVFV QYLEVKV
0001: MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH
0101: CYYAHGEDNE NFQRRCYWML EQDLMHIVFV HYLEVKGNRM STSGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS GDSRQASSSL QQNPEPQTVV
0201: PQIMHHQNAS TINSYNTTSV LGNRDGWTSA HGNRVKGSNS QRSGDVPAWD ASFENSLARY QNLPYNAPLT QTQPSTFGLI PMEGKTEKGS LLTSEHLRNP
0301: LQSQVNWQTP VQESVPLQKW PMDSHSGMTD ATDLALFGQG AHENFGTFSS LLGSQDQQSS SFQAPFTNNE AAYIPKLGPE DLIYEASANQ TLPLRKALLK
0401: KEDSLKKVDS FSRWVSKELG EMEDLQMQSS SGGIAWTSVE CENAAAGSSL SPSLSEDQRF TMIDFWPKWT QTDSEVEVMV IGTFLLSPQE VTSYSWSCMF
0501: GEVEVPADIL VDGVLCCHAP PHEVGRVPFY ITCSDRFSCS EVREFDFLPG STRKLNATDI YGANTIETSL HLRFENLLAL RCSVQEHHIF ENVGEKRRKI
0601: SKIMLLKDEK EPPLPGTIEK DLTELEAKER LIREEFEDKL YLWLIHKVTE EGKGPNILDE DGQGVLHLAA ALGYDWAIKP ILAAGVSINF RDANGWSALH
0701: WAAFSGREDT VAVLVSLGAD AGALADPSPE HPLGKTAADL AYGNGHRGIS GFLAESSLTS YLEKLTVDAK ENSSADSSGA KAVLTVAERT ATPMSYGDVP
0801: ETLSMKDSLT AVLNATQAAD RLHQVFRMQS FQRKQLSELG GDNKFDISDE LAVSFAAAKT KKSGHSSGAV HAAAVQIQKK YRGWKKRKEF LLIRQRIVKI
0901: QAHVRGHQVR KQYRAIIWSV GLLEKIILRW RRKGSGLRGF KRDTISKPTE PVCPAPQEDD YDFLKEGRKQ TEERLQKALT RVKSMAQYPE ARAQYRRLLT
1001: VVEGFRENEA SSSSALKNNT EEAANYNEED DLIDIDSLLD DDTFMSLAFE
0101: CYYAHGEDNE NFQRRCYWML EQDLMHIVFV HYLEVKGNRM STSGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS GDSRQASSSL QQNPEPQTVV
0201: PQIMHHQNAS TINSYNTTSV LGNRDGWTSA HGNRVKGSNS QRSGDVPAWD ASFENSLARY QNLPYNAPLT QTQPSTFGLI PMEGKTEKGS LLTSEHLRNP
0301: LQSQVNWQTP VQESVPLQKW PMDSHSGMTD ATDLALFGQG AHENFGTFSS LLGSQDQQSS SFQAPFTNNE AAYIPKLGPE DLIYEASANQ TLPLRKALLK
0401: KEDSLKKVDS FSRWVSKELG EMEDLQMQSS SGGIAWTSVE CENAAAGSSL SPSLSEDQRF TMIDFWPKWT QTDSEVEVMV IGTFLLSPQE VTSYSWSCMF
0501: GEVEVPADIL VDGVLCCHAP PHEVGRVPFY ITCSDRFSCS EVREFDFLPG STRKLNATDI YGANTIETSL HLRFENLLAL RCSVQEHHIF ENVGEKRRKI
0601: SKIMLLKDEK EPPLPGTIEK DLTELEAKER LIREEFEDKL YLWLIHKVTE EGKGPNILDE DGQGVLHLAA ALGYDWAIKP ILAAGVSINF RDANGWSALH
0701: WAAFSGREDT VAVLVSLGAD AGALADPSPE HPLGKTAADL AYGNGHRGIS GFLAESSLTS YLEKLTVDAK ENSSADSSGA KAVLTVAERT ATPMSYGDVP
0801: ETLSMKDSLT AVLNATQAAD RLHQVFRMQS FQRKQLSELG GDNKFDISDE LAVSFAAAKT KKSGHSSGAV HAAAVQIQKK YRGWKKRKEF LLIRQRIVKI
0901: QAHVRGHQVR KQYRAIIWSV GLLEKIILRW RRKGSGLRGF KRDTISKPTE PVCPAPQEDD YDFLKEGRKQ TEERLQKALT RVKSMAQYPE ARAQYRRLLT
1001: VVEGFRENEA SSSSALKNNT EEAANYNEED DLIDIDSLLD DDTFMSLAFE
Arabidopsis Description
CAMTA2Calmodulin-binding transcription activator 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.