CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92108	Canola	cytosol	90.55	32.59
Bra022188.1-P	Field mustard	cytosol	89.9	32.47
CDX95894	Canola	cytosol	89.9	32.36
AT3G16940.1	Thale cress	nucleus	76.55	27.81
PGSC0003DMT400011979	Potato	cytosol	58.96	25.78
Solyc01g060140.2.1	Tomato	nucleus	54.72	25.19
GSMUA_Achr5P21190_001	Banana	cytosol	43.32	25.0
CDY58036	Canola	nucleus	66.12	22.09
CDY22778	Canola	nucleus	66.12	22.09
KRH37009	Soybean	nucleus	59.28	19.98
KRH11981	Soybean	nucleus	58.31	19.65
TraesCS2B01G254000.2	Wheat	cytosol	47.56	19.57
Solyc12g099340.1.1	Tomato	nucleus	57.98	19.45
VIT_05s0077g01240.t01	Wine grape	cytosol	58.63	19.42
KRH50762	Soybean	nucleus	56.68	18.89
KRH02327	Soybean	nucleus	56.35	18.76
GSMUA_Achr8P10490_001	Banana	cytosol	51.14	18.74
KXG36244	Sorghum	nucleus	48.86	16.41
Os07t0490200-01	Rice	nucleus	49.19	16.29
TraesCS2D01G237300.2	Wheat	cytosol	47.56	16.1
TraesCS2A01G229400.1	Wheat	nucleus	47.56	16.1
HORVU2Hr1G051690.3	Barley	cytosol	47.56	15.9
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	46.91	14.88
CDX92455	Canola	cytosol	29.64	14.35
CDY13771	Canola	cytosol, nucleus, plastid	32.25	10.71
CDX76935	Canola	nucleus	31.6	10.24
CDY25585	Canola	nucleus	31.27	9.7
CDX89451	Canola	nucleus	32.25	9.63
CDY07431	Canola	nucleus	29.32	9.33
CDY28897	Canola	nucleus	28.99	9.12
CDX69907	Canola	nucleus	29.32	8.94
CDX81217	Canola	nucleus	28.66	8.92
CDY21580	Canola	cytosol, nucleus, plastid	28.34	8.71
CDY18719	Canola	cytosol	28.34	8.54
CDY01799	Canola	nucleus	28.01	8.39
CDY51184	Canola	nucleus	27.36	8.2
CDY12637	Canola	nucleus	27.36	8.12
CDX96099	Canola	nucleus	28.34	6.92
CDY69566	Canola	nucleus	0.65	0.73
GSMUA_Achr5P21200_001	Banana	cytosol	0.0	0.0
TraesCS2B01G254100.1	Wheat	cytosol	0.0	0.0
CDY61797	Canola	nucleus	0.0	0.0
CDX81478	Canola	nucleus	0.0	0.0
CDX96915	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY45590	EnsemblPlantsGene:GSBRNA2T00082316001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	PANTHER:PTHR23335	PANTHER:PTHR23335:SF3	PFAM:PF00612
PFscan:PS50096	ProteinID:CDY45590	ProteinID:CDY45590.1	SEG:seg	SMART:SM00015	SUPFAM:SSF52540
UniParc:UPI0004EF365B	UniProt:A0A078I465	MapMan:15.5.26	:	:	:

Description

BnaA04g14570DBnaA04g14570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I465]

Coordinates

chrLK032629:-:72466..73843

Molecular Weight (calculated)

35538.7 Da

IEP (calculated)

10.175

GRAVY (calculated)

-0.705

Length

307 amino acids

Sequence
(BLAST)

001: METRLPEKYA KRGNQKKEYF PVTDSRKDNL GGCTPADLAQ QNGFDGIAAY LAEKCLVAQF VAMKLAGNIS GTLETCKGEM SNQGPLPDDE QNLKDALAAY
101: RTAAEAAARI QGAFREKALK TARSKVIQFD NKEEEAKSII AAMKIQNAFR KYDTRRKIEA AYRIQCRFQT WKMRREFLNM RRQAIRIQAA FRGLQARKQY
201: SKILWSVGVL EKAIIRWRQK RKLFIGLQVS EAEAEEKAEE DFYKASQKQA EERLERSVVR VQAMFRSKKA QEDYRRMKLT HEETQVRLCL LFEYLSLETH
301: THTLNDT

Best Arabidopsis Sequence Match ( AT3G16940.1 )
(BLAST)

001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.