CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022188.1-P	Field mustard	cytosol	97.3	97.65
CDX92108	Canola	cytosol	97.54	97.54
CDY45590	Canola	cytosol	32.36	89.9
AT3G16940.1	Thale cress	nucleus	81.83	82.6
CDY22778	Canola	nucleus	69.05	64.09
CDY58036	Canola	nucleus	68.93	63.98
GSMUA_Achr5P21200_001	Banana	cytosol	10.55	61.22
CDX96915	Canola	nucleus	5.63	60.76
CDY69566	Canola	nucleus	19.34	60.44
TraesCS2B01G254100.1	Wheat	cytosol	9.73	60.14
KRH11981	Soybean	nucleus	57.33	53.68
KRH37009	Soybean	nucleus	56.98	53.35
KRH50762	Soybean	nucleus	56.98	52.77
Solyc12g099340.1.1	Tomato	nucleus	56.51	52.68
KRH02327	Soybean	nucleus	56.62	52.39
PGSC0003DMT400011979	Potato	cytosol	42.79	51.99
VIT_05s0077g01240.t01	Wine grape	cytosol	55.69	51.24
Solyc01g060140.2.1	Tomato	nucleus	39.51	50.52
GSMUA_Achr5P21190_001	Banana	cytosol	30.6	49.06
GSMUA_Achr8P10490_001	Banana	cytosol	44.31	45.11
KXG36244	Sorghum	nucleus	46.07	43.0
CDY61797	Canola	nucleus	5.63	42.86
TraesCS2A01G229400.1	Wheat	nucleus	44.9	42.23
TraesCS2D01G237300.2	Wheat	cytosol	44.9	42.23
HORVU2Hr1G051690.3	Barley	cytosol	44.55	41.39
Os07t0490200-01	Rice	nucleus	44.2	40.67
TraesCS2B01G254000.2	Wheat	cytosol	34.0	38.87
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	43.61	38.43
CDX81478	Canola	nucleus	5.63	30.57
CDY13771	Canola	cytosol, nucleus, plastid	31.18	28.79
CDX76935	Canola	nucleus	31.07	27.98
CDY25585	Canola	nucleus	31.89	27.47
CDX89451	Canola	nucleus	32.24	26.75
CDX92455	Canola	cytosol	19.46	26.18
CDX81217	Canola	nucleus	29.78	25.73
CDX69907	Canola	nucleus	29.54	25.02
CDY21580	Canola	cytosol, nucleus, plastid	28.96	24.72
CDY18719	Canola	cytosol	29.31	24.53
CDY28897	Canola	nucleus	26.96	23.57
CDY07431	Canola	nucleus	26.49	23.42
CDY51184	Canola	nucleus	27.2	22.63
CDY01799	Canola	nucleus	26.96	22.44
CDY12637	Canola	nucleus	26.96	22.24
CDX96099	Canola	nucleus	27.2	18.44

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	MapMan:15.5.26	Gene3D:2.60.40.10	GO:A0A078E5L7	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX95894	ProteinID:CDX95894	ProteinID:CDX95894.1	InterPro:CG-1_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00101890001	InterPro:IPR000048	InterPro:IPR002110
InterPro:IPR005559	InterPro:IPR013783	InterPro:IPR020683	InterPro:IPR036770	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold
InterPro:Ig_E-set	PFAM:PF00612	PFAM:PF03859	PFAM:PF12796	PFscan:PS50088	PFscan:PS50096
PFscan:PS50297	PFscan:PS51437	PANTHER:PTHR23335	PANTHER:PTHR23335:SF3	SMART:SM00015	SMART:SM00248
SMART:SM01076	SUPFAM:SSF48403	SUPFAM:SSF81296	UniParc:UPI0004EAE4A1	SEG:seg	:

Description

BnaC05g36450D

Coordinates

chrLK031891:-:1167796..1172621

Molecular Weight (calculated)

96937.6 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.524

Length

853 amino acids

Sequence
(BLAST)

001: MDGDGSSGRL IGSEIHGFHT LQDLDVQTML EEARSRWLRP NEIHAVLSNP KYFTINVKPV NLPTSGRIIL FDRKMLRNFR KDGHNWKKKK DGRTVKEAHE
101: HLKVGDEERI HVYYAHGEDN TTFVRRCYWL LDKARENIVL VHYRDTQEAA TTSGDSNSPS AHSSSNLVAV EDIELNPNDS LFLAINNTPV VKTHETRLHD
201: INTLDWDELL VQSDLDNQSA PIVDDMSYFT EHLQNATKDT AEHLTVADES LDALLNNGPQ SRENFGRWMD SFIGDPNGSL EDPSFEAMVT LYQDPLAPQA
301: TYNPHSDLPQ QVFNITEVSP AWAYSSEKTK IVVTGILHNS YQHLGSSNLF CICGDSCVPA EYVQAGVYRC FIPPHSPGMA NLYLSADGHE PISQCFNFEH
401: RPAPVSAKPV HENNQESKWE EFELQVRLAH LLFTSSNKLN VLSSNISPEN FLDAKKLSNK TSHLLNSWAY LIKSVQGSKV SFDQAKDQIF ELTLKNRVKE
501: WLMEKVLEGR NARDYDSKGL GVIHLCAILG YTWSIQLFSL SGLSLDFRDK QGWTALHWAA YYGREKMVAA LLTAGAKPNL VTDSRKDNLG GCTPADLAQQ
601: NGFDGIAAYL AEKCLVAQFV AMKLAGNISG TLETCKGEMS NQGPLPDDEQ NLKDALAAYR TAAEAAARIQ GAFREKALKT ARSKVIQFDN KEEEAKSIIA
701: AMKIQNAFRK YDTRRKIEAA YRIQCRFQTW KMRKEFLNIR RQAIRIQAAF RGLQARKQYS KILWSVGVLE KAIIRWRQKR KLFVGLQVSE AEAEEKAEED
801: FYKASQKQAE ERLERSVVRV QAMFRSKKAQ EDYRRMKLTH EETQLEYEFL HDI

Best Arabidopsis Sequence Match ( AT3G16940.1 )
(BLAST)

001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.