Factsheet for VIT_05s0077g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50762	Soybean	nucleus	63.86	64.28
KRH02327	Soybean	nucleus	63.54	63.88
Solyc12g099340.1.1	Tomato	nucleus	62.78	63.61
KRH11981	Soybean	nucleus	62.24	63.34
KRH37009	Soybean	nucleus	61.92	63.01
PGSC0003DMT400011979	Potato	cytosol	47.68	62.96
Solyc01g060140.2.1	Tomato	nucleus	44.66	62.07
GSMUA_Achr5P21200_001	Banana	cytosol	9.71	61.22
AT3G16940.1	Thale cress	nucleus	54.15	59.41
CDY45590	Canola	cytosol	19.42	58.63
TraesCS2B01G254100.1	Wheat	cytosol	8.52	57.25
CDY22778	Canola	nucleus	55.88	56.37
Bra038040.1-P	Field mustard	nucleus	55.77	56.26
Bra022188.1-P	Field mustard	cytosol	51.56	56.24
CDX92108	Canola	cytosol	51.67	56.15
CDY58036	Canola	nucleus	55.66	56.15
CDX95894	Canola	cytosol	51.24	55.69
GSMUA_Achr5P21190_001	Banana	cytosol	31.61	55.08
CDY69566	Canola	nucleus	15.75	53.48
GSMUA_Achr8P10490_001	Banana	cytosol	44.88	49.64
TraesCS2D01G237300.2	Wheat	cytosol	45.42	46.42
KXG36244	Sorghum	nucleus	45.74	46.39
TraesCS2A01G229400.1	Wheat	nucleus	45.31	46.31
HORVU2Hr1G051690.3	Barley	cytosol	45.2	45.64
Os07t0490200-01	Rice	nucleus	45.09	45.09
TraesCS2B01G254000.2	Wheat	cytosol	35.92	44.64
Zm00001d021516_P003	Maize	cytosol, nucleus, plasma membrane	43.37	41.53
VIT_00s0805g00010.t01	Wine grape	cytosol, nucleus, plastid	2.59	40.0
VIT_14s0036g00610.t01	Wine grape	plastid	5.29	33.11
VIT_05s0020g00630.t01	Wine grape	nucleus	31.72	28.88
VIT_01s0010g03850.t01	Wine grape	nucleus	28.91	27.69
VIT_07s0141g00250.t01	Wine grape	nucleus	32.36	22.17

Protein Annotations

Gene3D:1.20.5.190	Gene3D:1.25.40.20	EntrezGene:100243111	wikigene:100243111	MapMan:15.5.26	Gene3D:2.60.40.10
EMBL:AM460232	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN70197	ProteinID:CAN70197.1
ProteinID:CBI22906	ProteinID:CBI22906.3	InterPro:CG-1_dom	ncoils:Coil	UniProt:D7SY49	EMBL:FN595246
GO:GO:0001077	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006366	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	GO:GO:0043565	GO:GO:0045893	GO:GO:0045944
GO:GO:0070417	InterPro:IPR000048	InterPro:IPR002110	InterPro:IPR005559	InterPro:IPR013783	InterPro:IPR020683
InterPro:IPR036770	InterPro:IQ_motif_EF-hand-BS	InterPro:Ig-like_fold	InterPro:Ig_E-set	EntrezGene:LOC100243111	wikigene:LOC100243111
InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF03859	PFAM:PF12796	PFscan:PS50088	PFscan:PS50096
PFscan:PS50297	PFscan:PS51437	PANTHER:PTHR23335	PANTHER:PTHR23335:SF3	SMART:SM00015	SMART:SM00248
SMART:SM01076	SUPFAM:SSF48403	SUPFAM:SSF52540	SUPFAM:SSF81296	TIGR:TC54196	TIGR:TC62573
UniParc:UPI0001BE1E4C	ArrayExpress:VIT_05s0077g01240	EnsemblPlantsGene:VIT_05s0077g01240	EnsemblPlants:VIT_05s0077g01240.t01	RefSeq:XP_002272118	RefSeq:XP_002272118.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:986575..999532

Molecular Weight (calculated)

104872.0 Da

IEP (calculated)

7.305

GRAVY (calculated)

-0.489

Length

927 amino acids

Sequence
(BLAST)

001: MESSVPGRLA GWDIHGFRTM EDLDVDSILE EAKGRWLRPN EIHAILCNYT LFTVNVKPVN LPPSGKIVLF DRRMLRNFRK DGHNWKKKND GKTVKEAHEH
101: LKVGNDERIH VYYAHGQDNP TFVRRCYWLL DKTLEHIVLV HYRETQESQG SPVTPVNSSP SPNSATSDPS APWLLSEETD SGTGSTYRAG EKEHQEPRDS
201: ITVRNYEMRI HELNTLEWDE LLVSNDPNNS MAPKEGKISS FEQQNQHVIT SSNSYNRPHS TNDLPVGISP LGNPAESIAG NESAHFNFLD DVYFQKIGGQ
301: VNPNGQRRDS VAVGTGDPVD ILLKDSLEPQ DSFGRWMNYI MTDSPVSVDD PSLGSPVSSS HDSVVSAAGN HQQSSVPDTI FSITDFSPSW AISTEKTKIL
401: VIGFLHENYA DLAKSNLFFV CGDVCVPAEI IQLGVFRCLV PPHAPGLVNF YLSFDGHKPI SQVVTFEYRA PLLYNQTVSS EVETNWEEFQ FQMRLSHLLF
501: STSKGLNIMS SKISPNALRE AKNFVKKTSF IARNWANLTK TIGDNRILVS QAKDLLFEFA LLNKLQEWLV ERIVEGGKTS ERDGQGQGVI HLCAMLGYTR
601: AVYLYSLSGL SLDYRDKFGW TALHWAAYYG RQKMVAVLLS AGAKPNLVTD PTSENPGGCT AADLASKEGH DGLAAYLAEK GLVEQFNDMT LAGNVSGSLQ
701: VSTTEQINSE NLSEEEMNLK DTLAAYRTAA DAAARIQVAF RERSLKLRTK AVENCNPEIE ARNIVAAMRI QHAFRNYETR KRMAAAARIQ HRFRSWKIRK
801: EFLNMRRQAI KIQAVFRGFQ VRRQYRKILW SVGVLEKVIL RWRMKRKGFR GLQVDTVDQL QESDTEEDFF RASRRQAEDR VERSVIRVQA MFRSKKAQEE
901: YRRMKLAHNE AKLEFEGFID PDTNMDG

Best Arabidopsis Sequence Match ( AT3G16940.1 )
(BLAST)

001: MDGDGLGRLI GSEIHGFHTL QDLDVQTMLE EAKSRWLRPN EIHAILYNPK YFTINVKPVN LPNSGRIILF DRKMLRNFRK DGHNWKKKKD GRTVKEAHEH
101: LKVGNEERIH VYYAHGEDNT TFVRRCYWLL DKARENIVLV HYRDTQEAAT TSGDSISSPI SVSEQTFPNR VAAEDIDTVV RNHDISLHDI NTLDWDELLV
201: PTDLNNQSAP TVDNLSYFTE PLQNAANGTA EHGNATVADG SLDALLNDGP QSRESFGRWM NSFISESNGS LEDPSFEPMV MPRQDPLAPQ AVFHSHSNIP
301: EQVFNITDVS PAWAYSSEKT KILVTGFLHD SYQHLERSNL YCVCGDFCVP AEYLQAGVYR CIIPPHSPGM VNLYLSADGH KPISQCFRFE HRAVPVLDKT
401: VPEDNQDSKW EEFEFQVRLS HLLFTSSNKL NVLSSKISPH NLRDAKKLAS KTNHLLNSWA YLVKSIQGNK VSFDQAKDHL FELSLKNRLK EWLMEKVLEG
501: RNTLDYDSKG LGVIHLCASL GYTWSVQLFS LSGLSLNFRD KQGWTALHWA AYYGREKMVA ALLSAGARPN LVTDSTKDNL GGCMAADLAQ QNGYDGLAAY
601: LAEKCLVAQF RDMKIAGNIT GDLEACKAEM LNQGTLPEDE QSLKDALAAY RTAAEAAARI QGAFREKALK AARSSVIQFA NKEEEAKSII AAMKIQNAFR
701: KYDTRRKIEA AYRIQCRFQT WKIRREYLNM RRQAIRIQAA FRGLQARRQY KKILWSVGVL EKAVLRWRQK RKGFRGLQVA AEEDSPGEAQ EDFYKTSQRQ
801: AEERLERSVV RVQAMFRSKK AQQDYRRMKL THEEAQLEYG CLEDI

Arabidopsis Description

calmodulin binding;transcription regulators [Source:TAIR;Acc:AT3G16940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.