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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 2
  • mitochondrion 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96915 Canola nucleus 65.18 92.41
CDX81478 Canola nucleus 88.39 63.06
CDY69566 Canola nucleus 43.75 17.95
CDX81217 Canola nucleus 68.75 7.8
CDY21580 Canola cytosol, nucleus, plastid 66.07 7.41
CDY18719 Canola cytosol 66.96 7.36
CDX69907 Canola nucleus 66.07 7.35
CDY13771 Canola cytosol, nucleus, plastid 59.82 7.25
CDX76935 Canola nucleus 58.93 6.97
CDY25585 Canola nucleus 59.82 6.77
CDX89451 Canola nucleus 58.93 6.42
CDX95894 Canola cytosol 42.86 5.63
CDX92108 Canola cytosol 42.86 5.63
CDY22778 Canola nucleus 43.75 5.33
CDY58036 Canola nucleus 43.75 5.33
CDY28897 Canola nucleus 41.96 4.82
CDY07431 Canola nucleus 40.18 4.66
CDY51184 Canola nucleus 41.96 4.59
CDY12637 Canola nucleus 41.96 4.55
CDY01799 Canola nucleus 40.18 4.39
CDX96099 Canola nucleus 39.29 3.5
CDX92455 Canola cytosol 0.0 0.0
CDY45590 Canola cytosol 0.0 0.0
Protein Annotations
MapMan:35.1GO:A0A078JC46UniProt:A0A078JC46EnsemblPlants:CDY61797ProteinID:CDY61797ProteinID:CDY61797.1
InterPro:CG-1_domGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634EnsemblPlantsGene:GSBRNA2T00034374001InterPro:IPR005559PFAM:PF03859
PFscan:PS51437PANTHER:PTHR23335PANTHER:PTHR23335:SF12SMART:SM01076UniParc:UPI0004EE8671:
Description
BnaC02g46140DBnaC02g46140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC46]
Coordinates
chrLK034039:-:37787..38598
Molecular Weight (calculated)
13420.9 Da
IEP (calculated)
6.792
GRAVY (calculated)
-0.636
Length
112 amino acids
Sequence
(BLAST)
001: MVDVLRTPSS DSSLLIRFND STDFDELTKP VSPLHSFQVL RYFRKDGHNW RNKKDGKTVK EAHEKLKVGS IDVLHCYYAH EEDNENFQRR CYWMLEQELM
101: HVVFIQYLEV KV
Best Arabidopsis Sequence Match ( AT5G64220.1 )
(BLAST)
0001: MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH
0101: CYYAHGEDNE NFQRRCYWML EQDLMHIVFV HYLEVKGNRM STSGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS GDSRQASSSL QQNPEPQTVV
0201: PQIMHHQNAS TINSYNTTSV LGNRDGWTSA HGNRVKGSNS QRSGDVPAWD ASFENSLARY QNLPYNAPLT QTQPSTFGLI PMEGKTEKGS LLTSEHLRNP
0301: LQSQVNWQTP VQESVPLQKW PMDSHSGMTD ATDLALFGQG AHENFGTFSS LLGSQDQQSS SFQAPFTNNE AAYIPKLGPE DLIYEASANQ TLPLRKALLK
0401: KEDSLKKVDS FSRWVSKELG EMEDLQMQSS SGGIAWTSVE CENAAAGSSL SPSLSEDQRF TMIDFWPKWT QTDSEVEVMV IGTFLLSPQE VTSYSWSCMF
0501: GEVEVPADIL VDGVLCCHAP PHEVGRVPFY ITCSDRFSCS EVREFDFLPG STRKLNATDI YGANTIETSL HLRFENLLAL RCSVQEHHIF ENVGEKRRKI
0601: SKIMLLKDEK EPPLPGTIEK DLTELEAKER LIREEFEDKL YLWLIHKVTE EGKGPNILDE DGQGVLHLAA ALGYDWAIKP ILAAGVSINF RDANGWSALH
0701: WAAFSGREDT VAVLVSLGAD AGALADPSPE HPLGKTAADL AYGNGHRGIS GFLAESSLTS YLEKLTVDAK ENSSADSSGA KAVLTVAERT ATPMSYGDVP
0801: ETLSMKDSLT AVLNATQAAD RLHQVFRMQS FQRKQLSELG GDNKFDISDE LAVSFAAAKT KKSGHSSGAV HAAAVQIQKK YRGWKKRKEF LLIRQRIVKI
0901: QAHVRGHQVR KQYRAIIWSV GLLEKIILRW RRKGSGLRGF KRDTISKPTE PVCPAPQEDD YDFLKEGRKQ TEERLQKALT RVKSMAQYPE ARAQYRRLLT
1001: VVEGFRENEA SSSSALKNNT EEAANYNEED DLIDIDSLLD DDTFMSLAFE
Arabidopsis Description
CAMTA2Calmodulin-binding transcription activator 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPP4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.