Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61797 | Canola | nucleus | 92.41 | 65.18 |
| CDX81478 | Canola | nucleus | 93.67 | 47.13 |
| CDY69566 | Canola | nucleus | 60.76 | 17.58 |
| CDX81217 | Canola | nucleus | 92.41 | 7.4 |
| CDY18719 | Canola | cytosol | 92.41 | 7.16 |
| CDY21580 | Canola | cytosol, nucleus, plastid | 88.61 | 7.01 |
| CDX69907 | Canola | nucleus | 88.61 | 6.95 |
| CDY13771 | Canola | cytosol, nucleus, plastid | 81.01 | 6.93 |
| CDX76935 | Canola | nucleus | 79.75 | 6.65 |
| CDY25585 | Canola | nucleus | 81.01 | 6.46 |
| CDX89451 | Canola | nucleus | 79.75 | 6.13 |
| CDX95894 | Canola | cytosol | 60.76 | 5.63 |
| CDX92108 | Canola | cytosol | 60.76 | 5.63 |
| CDY22778 | Canola | nucleus | 60.76 | 5.22 |
| CDY58036 | Canola | nucleus | 60.76 | 5.22 |
| CDY28897 | Canola | nucleus | 54.43 | 4.41 |
| CDY07431 | Canola | nucleus | 53.16 | 4.35 |
| CDY51184 | Canola | nucleus | 54.43 | 4.2 |
| CDY12637 | Canola | nucleus | 54.43 | 4.16 |
| CDY01799 | Canola | nucleus | 50.63 | 3.9 |
| CDX96099 | Canola | nucleus | 50.63 | 3.18 |
| CDX92455 | Canola | cytosol | 0.0 | 0.0 |
| CDY45590 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX96915 | EnsemblPlantsGene:GSBRNA2T00103807001 | GO:A0A078E4F8 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:CG-1_dom |
| InterPro:IPR005559 | PANTHER:PTHR23335 | PANTHER:PTHR23335:SF12 | PFAM:PF03859 | PFscan:PS51437 | ProteinID:CDX96915 |
| ProteinID:CDX96915.1 | SMART:SM01076 | UniParc:UPI0004EEFB70 | MapMan:35.1 | : | : |
Description
BnaC02g30530D
Coordinates
chrLK031896:-:358401..358859
Molecular Weight (calculated)
9821.8 Da
IEP (calculated)
8.232
GRAVY (calculated)
-0.867
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MFDRKVLRYF RKDGHNWRKK KDGETVKEAH EKLKVGSIDV LHCYYAHEED NENFQRRCYW MLEQELMHVV FVQYLEVKV
0001: MVDRRSFGSI TPPLQLDMEQ LLSEAQHRWL RPTEICEILQ NYHKFHIASE SPTRPASGSL FLFDRKVLRY FRKDGHNWRK KKDGKTIREA HEKLKVGSID
0101: VLHCYYAHGE ANENFQRRCY WMLEQHLMHI VFVHYLEVKG NRTSIGMKEN NSNSVNGTAS VNIDSTASPT STLSSLCEDA DTGDSQQASS VLRPSPEPQT
0201: GNRYGWTPAP GMRNVSQVHG NRVRESDSQR LVDVRALDTV GNSLTRFHDQ PYCNNLLTQM QPSNTDSMLV EENSEKGGRL KAEHIRNPLQ TQFNWQDDTD
0301: LALFEQSAQD NFETFSSLLG SENLQPFGIS YQAPPSNMDS EYMPVMKILR RSEDSLKKVD SFSKWAIKEL GEMEDLQMQS SRGDIAWTTV ECETAAAGIS
0401: LSPSLSEDQR FTIVDFWPKS AKTDAEVEVM VIGTFLLSPQ EVTKYNWSCM FGEVEVPAEI LVDGVLCCHA PPHTAGHVPF YVTCSNRFAC SEVREFDFLS
0501: GSTQKINATD VYGTYTNEAS LQLRFEKMLA HRDFVHEHHI FEDVGDKRRQ ISKIMLLKEE KEYLLPGTYQ RDSTKQEPKG QLFRELFEEE LYIWLIHKVT
0601: EEGKGPNILD EDGQGILHFV AALGYDWAIK PVLAAGVNIN FRDANGWSAL HWAAFSGREE TVAVLVSLGA DAGALTDPSP ELPLGKTAAD LAYANGHRGI
0701: SGFLAESSLT SYLEKLTVDS KENSPANSCG EKAVQTVSER TAAPMTYGDV PEKLSLKDSL TAVRNATQAA DRLHQVFRMQ SFQRKQLCDI GDDEKIDISD
0801: QLAVSFAASK TKNPGQGDVS LSCAATHIQK KYRGWKKRKE FLLIRQRIVK IQAHVRGHQV RKQYRTVIWS VGLLEKIILR WRRKGNGLRG FKRNAVAKTV
0901: EPEPPVSAIC PRIPQEDEYD YLKEGRKQTE ERLQKALTRV KSMVQYPEAR DQYRRLLTVV EGFRENEASS SASINNKEEE AVNCEEDDFI DIESLLNDDT
1001: LMMSISP
0101: VLHCYYAHGE ANENFQRRCY WMLEQHLMHI VFVHYLEVKG NRTSIGMKEN NSNSVNGTAS VNIDSTASPT STLSSLCEDA DTGDSQQASS VLRPSPEPQT
0201: GNRYGWTPAP GMRNVSQVHG NRVRESDSQR LVDVRALDTV GNSLTRFHDQ PYCNNLLTQM QPSNTDSMLV EENSEKGGRL KAEHIRNPLQ TQFNWQDDTD
0301: LALFEQSAQD NFETFSSLLG SENLQPFGIS YQAPPSNMDS EYMPVMKILR RSEDSLKKVD SFSKWAIKEL GEMEDLQMQS SRGDIAWTTV ECETAAAGIS
0401: LSPSLSEDQR FTIVDFWPKS AKTDAEVEVM VIGTFLLSPQ EVTKYNWSCM FGEVEVPAEI LVDGVLCCHA PPHTAGHVPF YVTCSNRFAC SEVREFDFLS
0501: GSTQKINATD VYGTYTNEAS LQLRFEKMLA HRDFVHEHHI FEDVGDKRRQ ISKIMLLKEE KEYLLPGTYQ RDSTKQEPKG QLFRELFEEE LYIWLIHKVT
0601: EEGKGPNILD EDGQGILHFV AALGYDWAIK PVLAAGVNIN FRDANGWSAL HWAAFSGREE TVAVLVSLGA DAGALTDPSP ELPLGKTAAD LAYANGHRGI
0701: SGFLAESSLT SYLEKLTVDS KENSPANSCG EKAVQTVSER TAAPMTYGDV PEKLSLKDSL TAVRNATQAA DRLHQVFRMQ SFQRKQLCDI GDDEKIDISD
0801: QLAVSFAASK TKNPGQGDVS LSCAATHIQK KYRGWKKRKE FLLIRQRIVK IQAHVRGHQV RKQYRTVIWS VGLLEKIILR WRRKGNGLRG FKRNAVAKTV
0901: EPEPPVSAIC PRIPQEDEYD YLKEGRKQTE ERLQKALTRV KSMVQYPEAR DQYRRLLTVV EGFRENEASS SASINNKEEE AVNCEEDDFI DIESLLNDDT
1001: LMMSISP
Arabidopsis Description
EICBP.BEthylene induced calmodulin binding protein [Source:UniProtKB/TrEMBL;Acc:F4KCL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.