Factsheet for Solyc03g082500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 15501910

nucleus: 28394025

gfp PMID: 15501910 doi

J Leclercq, B Ranty, MT Sanchez-Ballesta, Z Li, B Jones, A Jauneau, JC Pech, A Latché, R Ranjeva, M Bouzayen

UMR 990 INRA/INP-ENSAT, Av. de l'Agrobiopole, BP 107, F-31326 Castanet Tolosan cedex, France.

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008340	Potato	cytosol	98.5	98.5
Solyc06g008830.1.1	Tomato	cytosol	12.88	75.49
VIT_16s0098g01140.t01	Wine grape	cytosol	73.41	74.16
KRH64343	Soybean	cytosol	73.58	73.7
GSMUA_Achr7P05810_001	Banana	cytosol	67.06	73.31
Solyc08g062990.1.1	Tomato	cytosol	17.39	73.24
KRH53593	Soybean	cytosol	73.08	72.95
Solyc10g050080.1.1	Tomato	cytosol	16.89	71.13
Solyc05g041110.1.1	Tomato	nucleus	13.21	70.54
GSMUA_Achr3P12500_001	Banana	cytosol	63.21	70.0
Solyc01g096350.2.1	Tomato	cytosol, nucleus	68.39	69.44
GSMUA_Achr9P20900_001	Banana	cytosol	63.04	69.43
Zm00001d036416_P001	Maize	plasma membrane	70.57	69.41
GSMUA_Achr2P03380_001	Banana	cytosol	62.37	69.33
Solyc04g049100.1.1	Tomato	cytosol	16.39	69.01
GSMUA_AchrUn_...	Banana	cytosol	61.37	68.47
GSMUA_Achr1P04170_001	Banana	cytosol	62.21	68.38
Os06t0714200-01	Rice	plasma membrane	71.24	68.38
KXG20873	Sorghum	cytosol	71.4	68.32
Bra036512.1-P	Field mustard	cytosol	65.38	67.41
CDY19836	Canola	cytosol	65.22	67.24
CDX87128	Canola	cytosol	65.22	67.24
HORVU7Hr1G091360.1	Barley	cytosol	69.9	67.09
TraesCS7B01G287100.1	Wheat	cytosol	69.73	67.04
TraesCS7A01G384500.1	Wheat	cytosol	69.73	67.04
TraesCS7D01G380900.1	Wheat	cytosol	69.73	67.04
AT5G24430.1	Thale cress	cytosol	66.05	66.5
CDX88104	Canola	cytosol	64.21	65.87
Solyc10g061860.1.1	Tomato	cytosol	15.38	65.71
AT3G49370.1	Thale cress	cytosol	65.22	65.66
Bra017989.1-P	Field mustard	cytosol	64.88	65.65
CDY08129	Canola	cytosol	65.05	65.38
CDX80445	Canola	cytosol	63.71	65.35
Bra009765.1-P	Field mustard	cytosol	61.87	65.03
Zm00001d014773_P001	Maize	cytosol	59.87	64.97
CDY05930	Canola	cytosol	64.88	64.88
TraesCS1D01G176900.1	Wheat	cytosol	67.73	64.29
TraesCS1B01G201900.1	Wheat	cytosol	67.73	64.29
TraesCS1A01G178400.1	Wheat	cytosol	67.73	64.29
HORVU1Hr1G047350.2	Barley	cytosol	67.39	64.27
KXG38195	Sorghum	cytosol	67.89	63.34
Solyc02g065070.2.1	Tomato	cytosol	61.71	62.44
Solyc01g108400.2.1	Tomato	cytosol	60.54	61.56
Zm00001d032473_P001	Maize	cytosol	57.02	61.44
CDX86978	Canola	cytosol	65.72	60.55
Bra019593.1-P	Field mustard	cytosol	65.89	60.52
CDY00200	Canola	cytosol	66.05	60.49
Solyc02g090510.2.1	Tomato	nucleus	60.37	59.47
Zm00001d013868_P001	Maize	cytosol	52.17	58.87
Solyc10g078390.1.1	Tomato	cytosol	56.19	58.54
Os10t0510700-00	Rice	plasma membrane	68.06	55.75
CDX87112	Canola	cytosol	25.92	53.45
Solyc03g033540.2.1	Tomato	extracellular	40.13	42.48
Solyc02g083850.2.1	Tomato	plastid	40.47	42.46
Solyc12g005030.1.1	Tomato	cytosol	24.08	40.0
Solyc10g079130.1.1	Tomato	nucleus	32.44	36.95
Solyc01g008440.2.1	Tomato	cytosol	32.78	36.77
Solyc11g065660.1.1	Tomato	cytosol	32.61	36.59
Solyc09g005550.2.1	Tomato	cytosol	31.61	35.73
Solyc03g113390.2.1	Tomato	cytosol	31.61	35.13
Solyc06g073350.2.1	Tomato	plastid	30.43	33.96
TraesCS4A01G458300.1	Wheat	cytosol	62.37	22.76

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.10.510.10	MapMan:18.4.5.5	Gene3D:3.30.200.20	EMBL:AY079049	InterPro:EF-hand-dom_pair
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004683
GO:GO:0005488	GO:GO:0005515	GO:GO:0005516	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009738
GO:GO:0009931	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0018105	GO:GO:0019538	GO:GO:0035556	GO:GO:0046777	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24349	PANTHER:PTHR24349:SF186
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	UniProt:Q8RY07	SMART:SM00220	SUPFAM:SSF47473	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc03g082500.2	EnsemblPlants:Solyc03g082500.2.1	UniParc:UPI00000A589A	SEG:seg	:

Description

Serine/threonine protein kinase pk23 [Source:UniProtKB/TrEMBL;Acc:Q8RY07]

Coordinates

chr3:+:52424103..52432685

Molecular Weight (calculated)

66846.1 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.360

Length

598 amino acids

Sequence
(BLAST)

001: MGQCCSKGVS GENGGSVVAI GDGNSAVSTN NRPKPPPSPV RQSVGNGMSY TNNSTPAHSF TASPFQSPYP AGIAPSPSPV GTPRRKFKWP FPPPSPAKPI
101: LSAIFKRQGG TSVKPKEGPI PEDEGGEGER QLDKSFGYPK NLTSKYELGK EVGRGHFGHT CWAKGKKGEL KNQPVAVKII SKAKMTTAIS IEDVRREVKI
201: LKALSGHQNL VKFYDAFEDA NNVYIVMELC EGGELLDRIL SRGGRYTEED AKSIVVQILN VVAFCHLQGV VHRDLKPENF LFAKKDEDSP MKVIDFGLSD
301: FIKPDQRLND IVGSAYYVAP EVLHRSYSIE ADMWSIGVIT YILLCGSRPF WARTESGIFR SVLRADPNFE DSPWPAVSAE ARDFVKRLLN KDHRKRMTAS
401: QALTHPWLRT ENPFVPLDIL IFKLVKSYIR TSPLKRAALK ALSKALTEEE LIYLKAQFNL LEPKAGFVSL DNFRMALMKQ TTDAMREARV LDIINLLEPL
501: SYKQMDFEEF CAAAISTYQL EALENWEHIA SAAFNYFEQE GNRVISVEEL AQEMNLGPTA YAFLKDWIRP SDRKLSFLGY TKFLHGVTMR SSSTRHHR

Best Arabidopsis Sequence Match ( AT5G24430.1 )
(BLAST)

001: MGHCYSRNIS AVEDDEIPTG NGEVSNQPSQ NHRHASIPQS PVASGTPEVN SYNISPFQSP LPAGVAPSPA RTPGRKFKWP FPPPSPAKPI MAALRRRRGA
101: PPQPRDEPIP EDSEDVVDHG GDSGGGERLD KNFGFGKNFE GKYELGKEVG RGHFGHTCWA KAKKGKMKNQ TVAVKIISKA KMTSTLSIED VRREVKLLKA
201: LSGHRHMVKF YDVYEDADNV FVVMELCEGG ELLDRILARG GRYPEVDAKR ILVQILSATA FFHLQGVVHR DLKPENFLFT SRNEDAILKV IDFGLSDFIR
301: YDQRLNDVVG SAYYVAPEVL HRSYSTEADM WSIGVISYIL LCGSRPFYGR TESAIFRCVL RANPNFEDMP WPSISPTAKD FVKRLLNKDH RKRMTAAQAL
401: AHPWLRDENP GLLLDFSVYK LVKSYIRASP FRRSALKALS KAIPDEELVF LKAQFMLLDP KDGGLSLNCF TMALTRYATD AMMESRLPDI LNTMQPLAQK
501: KLDFEEFCAA AVSVYQLEAL EEWEQIATSA FEHFEHEGNR IISVQELAGE MSVGPSAYPL LKDWIRSSDG KLSFLGYAKF LHGVTVRSSS SRPR

Arabidopsis Description

CRK4CDPK-related kinase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIM9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.