Factsheet for TraesCS1A01G095900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G104900.1	Wheat	extracellular, plasma membrane, plastid	86.6	72.97
TraesCS1B01G127800.1	Wheat	plasma membrane	85.36	71.73
TraesCS5A01G442900.1	Wheat	cytosol	62.31	43.86
TraesCS6A01G141000.1	Wheat	cytosol	41.74	40.61
Zm00001d021115_P001	Maize	cytosol	34.27	36.42
Zm00001d021117_P001	Maize	cytosol, plastid	35.51	34.13
Zm00001d021097_P001	Maize	cytosol	38.94	33.33
Zm00001d021107_P001	Maize	cytosol	37.69	33.24
Zm00001d021099_P001	Maize	cytosol, vacuole	33.96	32.63
TraesCS3A01G464200.1	Wheat	cytosol	37.07	30.05
Zm00001d021103_P001	Maize	cytosol	28.35	29.84
TraesCS3A01G464300.1	Wheat	cytosol	36.45	29.25
TraesCS3A01G497100.1	Wheat	cytosol	38.63	28.84
TraesCS3A01G467500.1	Wheat	cytosol	31.78	28.65
TraesCS3A01G463900.1	Wheat	plastid	37.07	28.61
TraesCS3A01G464700.1	Wheat	cytosol	32.09	25.43
TraesCS3A01G464100.1	Wheat	plastid	31.15	24.33
EES02090	Sorghum	cytosol	30.53	23.67
TraesCS3A01G463800.1	Wheat	extracellular, vacuole	15.58	20.41
TraesCS3A01G497300.1	Wheat	cytosol	21.5	17.21
TraesCS3A01G498000.1	Wheat	cytosol	20.56	16.79
TraesCS3A01G497400.1	Wheat	peroxisome	20.25	16.54
TraesCS5A01G350400.1	Wheat	cytosol	18.07	16.07

Protein Annotations

EnsemblPlants:TraesCS1A01G095900.1	EnsemblPlantsGene:TraesCS1A01G095900	InterPro:DUF295	PANTHER:PTHR33165	PANTHER:PTHR33165:SF11	PFAM:PF03478
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:91416423..91417388

Molecular Weight (calculated)

35607.5 Da

IEP (calculated)

7.716

GRAVY (calculated)

0.065

Length

321 amino acids

Sequence
(BLAST)

001: MGTQCWSSLM PELVDRIGGC LLDTADLDCY MALRAVCHNW RGATVDPKNT LHTRFRPHHW VMLDYSSHSE DARLLVNTVS GRYHGRDMPL LRKYYIISIT
101: IDGLLVLMAK IPPHAVCVLN PFTGHMVHFV ARMRPNVPAA AVSDSSPHRL VLYCHDTMKL YMAGPDSGSF IRYITNYDCP FVRKVVQGCV AADGHQGLLP
201: PLPAMVVAKI ADLMTPLIVG FPADDQLDSR KSCYLVESAG EILVIFKLGN RVEVFKMDGM GGNMLVHVKN IGSHSIFISH SQKCLSLDAD KFPSIEANCI
301: YFTECLSSPS TDIPPQGRRT S

Best Arabidopsis Sequence Match ( AT2G24080.1 )
(BLAST)

001: MDGLDDRPAS VAEVGNSKRS GSPKYNERAK TPRLDPKLGS PLLLLSPEEG GFRLYKPDED KFYETKSDFS GYRFLASSGK WFLVVDSRWD LYIIDVFSDE
101: RISLPPLEST QGGLYMVERE GSNDFKVTLI GGSLKDDKNG DFVVVWQFEQ GQFLGFCKKG DLHYRDIPIR VDVRREFRGL QDVVLKGYNL YILVNRSFIR
201: HIDLSGQDGF KNVSETPRFP ISVSAFGRDL GISEIKKVIS FSDSIAVTTS GDVLLVFTTA FESLGERSRI FHVYKRDPEK ELKGNICGTS LVEVESIGDE
301: ALFFDFGITV PADHTLGIEP NCIYFTRNDR FGHKDGSIPC LVDICVYNIA TRTFKRFPSL SNLKLKDAMW FLPS

Arabidopsis Description

F-box protein (DUF295) [Source:UniProtKB/TrEMBL;Acc:O82236]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.