Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G040850.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 40.47 | 97.75 |
| HORVU7Hr1G044360.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 38.6 | 93.26 |
| HORVU1Hr1G009350.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 38.14 | 92.13 |
| HORVU3Hr1G044970.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 20.0 | 89.58 |
| TraesCS7D01G286400.1 | Wheat | mitochondrion, plasma membrane | 96.74 | 83.87 |
| HORVU6Hr1G037090.1 | Barley | cytosol, plastid, vacuole | 52.56 | 83.09 |
| BAC19862 | Rice | plasma membrane | 79.07 | 82.93 |
| TraesCS7A01G238000.1 | Wheat | mitochondrion | 95.35 | 82.0 |
| ATMG00270.1 | Thale cress | plasma membrane | 77.67 | 81.46 |
| GRMZM5G897755_P01 | Maize | plasma membrane | 81.4 | 79.55 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, plasma membrane | 75.81 | 78.74 |
| TraesCS7A01G526200.1 | Wheat | mitochondrion, plasma membrane | 89.3 | 77.73 |
| KRH45920 | Soybean | plasma membrane, vacuole | 77.21 | 75.8 |
| KXG19687 | Sorghum | mitochondrion | 40.0 | 61.87 |
| TraesCS7B01G051500.1 | Wheat | mitochondrion, plasma membrane | 88.37 | 60.51 |
| Solyc10g045730.1.1 | Tomato | mitochondrion | 30.23 | 52.42 |
| OQU75662 | Sorghum | mitochondrion, plasma membrane | 29.77 | 28.57 |
| OQU77742 | Sorghum | mitochondrion | 31.63 | 22.37 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G097900.1 | EnsemblPlantsGene:TraesCS1A01G097900 | Gene3D:1.20.120.1200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008137 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0055114 | InterPro:NADH_UbQ/plastoQ_OxRdtase_su6 | PANTHER:PTHR33269 | PANTHER:PTHR33269:SF4 |
| PFAM:PF00499 | TMHMM:TMhelix | MapMan:2.4.1.3.7 | : | : | : |
Description
No Description!
Coordinates
chr1A:+:94580982..94581629
Molecular Weight (calculated)
24509.1 Da
IEP (calculated)
9.318
GRAVY (calculated)
0.380
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVRAKNPVH SILFPILVFC DTSGLLILLG LDFSAMISPV VHIGAIAVSF LFVVMMFNIQ IAEIHEEVLR YLPVSGIIGL IFWWEMFFIL DNETIPLLPT
101: HRNTTSLRYT VYAGKVQSWT NLETLGNLLY TYYSVWFLVS SLILLAAMIG AIVLTMHRTT KVKRQDVFRR NALDSRRNIM NRTISPFGHS HRRSFSSKAE
201: GGESQDSYNP AYIDF
101: HRNTTSLRYT VYAGKVQSWT NLETLGNLLY TYYSVWFLVS SLILLAAMIG AIVLTMHRTT KVKRQDVFRR NALDSRRNIM NRTISPFGHS HRRSFSSKAE
201: GGESQDSYNP AYIDF
001: MILSVLSSPA LVSGLMVARA KNPVHSVLFP IPVFRDTSGL LLLLGLDFFA MIFPVVHIGA IAVSFLFVVM MFHIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
Arabidopsis Description
NAD6NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:G1C2Y0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.