Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G040850.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 38.65 | 89.89 |
| ATMG00270.1 | Thale cress | plasma membrane | 86.47 | 87.32 |
| TraesCS7D01G285400.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 39.61 | 87.23 |
| HORVU7Hr1G044360.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 36.72 | 85.39 |
| BAC19862 | Rice | plasma membrane | 84.54 | 85.37 |
| HORVU1Hr1G009350.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 36.23 | 84.27 |
| HORVU0Hr1G037060.1 | Barley | endoplasmic reticulum | 83.57 | 83.98 |
| HORVU3Hr1G044970.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 19.32 | 83.33 |
| KRH45920 | Soybean | plasma membrane, vacuole | 86.96 | 82.19 |
| TraesCS2B01G283400.1 | Wheat | mitochondrion | 78.26 | 80.2 |
| GRMZM5G897755_P01 | Maize | plasma membrane | 84.54 | 79.55 |
| TraesCS3D01G386900.1 | Wheat | mitochondrion | 76.81 | 78.71 |
| HORVU5Hr1G042680.1 | Barley | mitochondrion, plasma membrane | 74.4 | 77.39 |
| HORVU6Hr1G037090.1 | Barley | cytosol, plastid, vacuole | 50.24 | 76.47 |
| TraesCS1A01G097900.1 | Wheat | plasma membrane | 78.74 | 75.81 |
| TraesCS1B01G458600.1 | Wheat | mitochondrion, plasma membrane | 85.51 | 71.66 |
| TraesCS6B01G464600.1 | Wheat | mitochondrion, plasma membrane | 84.06 | 70.45 |
| TraesCS7A01G526200.1 | Wheat | mitochondrion, plasma membrane | 84.06 | 70.45 |
| TraesCS5B01G388600.1 | Wheat | mitochondrion, plasma membrane | 83.09 | 69.64 |
| TraesCS2B01G284000.1 | Wheat | mitochondrion, plasma membrane | 82.61 | 69.23 |
| TraesCS7D01G286400.1 | Wheat | mitochondrion, plasma membrane | 82.61 | 68.95 |
| TraesCS4B01G238300.1 | Wheat | mitochondrion, plasma membrane | 85.02 | 68.48 |
| TraesCS7A01G238000.1 | Wheat | mitochondrion | 82.61 | 68.4 |
| KXG19687 | Sorghum | mitochondrion | 45.89 | 68.35 |
| Solyc10g045730.1.1 | Tomato | mitochondrion | 34.78 | 58.06 |
| BAV58153 | Barley | mitochondrion, plasma membrane | 84.06 | 55.77 |
| TraesCS7B01G051500.1 | Wheat | mitochondrion, plasma membrane | 84.06 | 55.41 |
| TraesCS2D01G247500.1 | Wheat | mitochondrion, plasma membrane | 79.23 | 55.22 |
| Zm00001d035824_P001 | Maize | cytosol, plasma membrane, vacuole | 28.02 | 46.4 |
| OQU75662 | Sorghum | mitochondrion, plasma membrane | 35.75 | 33.04 |
| OQU77742 | Sorghum | mitochondrion | 35.75 | 24.34 |
Protein Annotations
| Gene3D:1.20.120.1200 | MapMan:2.4.1.3.7 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008137 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0055114 |
| EnsemblPlantsGene:GSMUA_AchrUn_randomG10130_001 | EnsemblPlants:GSMUA_AchrUn_randomP10130_001 | EnsemblPlants:GSMUA_AchrUn_randomT10130_001 | UniProt:M0U7X3 | InterPro:NADH_UbQ/plastoQ_OxRdtase_su6 | PFAM:PF00499 |
| PANTHER:PTHR33269 | PANTHER:PTHR33269:SF4 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI0002967059 | SEG:seg |
Description
NADH-ubiquinone oxidoreductase chain 6 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10130_001]
Coordinates
chrchrUn_random:-:48577877..48578500
Molecular Weight (calculated)
23442.3 Da
IEP (calculated)
9.412
GRAVY (calculated)
0.646
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MILSVSSSLA LVSGLMVVRA KNPVHSVSFP IPVFRNTSGL LILLGLDFSA MIFPVVYIGA IAVSFLFVVM MFNIQIAEIH EEVLRYLPVS GIIGLILWWE
101: MFFILDNETI PLLPTYRNTT SLRYTVHAGK VHCCTNLETL GNLLYTNYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFQRNALDS RRTIMRRTTD
201: LYQTTID
101: MFFILDNETI PLLPTYRNTT SLRYTVHAGK VHCCTNLETL GNLLYTNYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFQRNALDS RRTIMRRTTD
201: LYQTTID
001: MILSVLSSPA LVSGLMVARA KNPVHSVLFP IPVFRDTSGL LLLLGLDFFA MIFPVVHIGA IAVSFLFVVM MFHIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
Arabidopsis Description
NAD6NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:G1C2Y0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.