Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 4
- extracellular 4
- plastid 2
- vacuole 3
- plasma membrane 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G040850.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 40.98 | 94.38 |
| HORVU7Hr1G044360.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 39.02 | 89.89 |
| BAC19862 | Rice | plasma membrane | 88.78 | 88.78 |
| HORVU1Hr1G009350.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 38.54 | 88.76 |
| KRH45920 | Soybean | plasma membrane, vacuole | 94.63 | 88.58 |
| TraesCS7D01G285400.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 40.49 | 88.3 |
| HORVU0Hr1G037060.1 | Barley | endoplasmic reticulum | 87.8 | 87.38 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, plasma membrane | 87.32 | 86.47 |
| HORVU3Hr1G044970.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 20.0 | 85.42 |
| TraesCS2B01G283400.1 | Wheat | mitochondrion | 82.93 | 84.16 |
| TraesCS3D01G386900.1 | Wheat | mitochondrion | 81.46 | 82.67 |
| GRMZM5G897755_P01 | Maize | plasma membrane | 88.29 | 82.27 |
| HORVU6Hr1G037090.1 | Barley | cytosol, plastid, vacuole | 53.17 | 80.15 |
| HORVU5Hr1G042680.1 | Barley | mitochondrion, plasma membrane | 77.07 | 79.4 |
| TraesCS1A01G097900.1 | Wheat | plasma membrane | 81.46 | 77.67 |
| TraesCS1B01G458600.1 | Wheat | mitochondrion, plasma membrane | 89.76 | 74.49 |
| TraesCS7A01G526200.1 | Wheat | mitochondrion, plasma membrane | 88.29 | 73.28 |
| TraesCS6B01G464600.1 | Wheat | mitochondrion, plasma membrane | 88.29 | 73.28 |
| TraesCS2B01G284000.1 | Wheat | mitochondrion, plasma membrane | 87.8 | 72.87 |
| TraesCS5B01G388600.1 | Wheat | mitochondrion, plasma membrane | 87.32 | 72.47 |
| TraesCS7D01G286400.1 | Wheat | mitochondrion, plasma membrane | 86.83 | 71.77 |
| TraesCS4B01G238300.1 | Wheat | mitochondrion, plasma membrane | 89.27 | 71.21 |
| TraesCS7A01G238000.1 | Wheat | mitochondrion | 86.83 | 71.2 |
| KXG19687 | Sorghum | mitochondrion | 47.32 | 69.78 |
| Solyc10g045730.1.1 | Tomato | mitochondrion | 37.56 | 62.1 |
| BAV58153 | Barley | mitochondrion, plasma membrane | 88.29 | 58.01 |
| TraesCS2D01G247500.1 | Wheat | mitochondrion, plasma membrane | 82.93 | 57.24 |
| TraesCS7B01G051500.1 | Wheat | mitochondrion, plasma membrane | 87.32 | 57.01 |
| Zm00001d035824_P001 | Maize | cytosol, plasma membrane, vacuole | 28.78 | 47.2 |
| OQU75662 | Sorghum | mitochondrion, plasma membrane | 36.59 | 33.48 |
| OQU77742 | Sorghum | mitochondrion | 37.56 | 25.33 |
Protein Annotations
| Gene3D:1.20.120.1200 | MapMan:2.4.1.3.7 | EntrezGene:814580 | ProteinID:AEK01251.1 | ProteinID:AEK01284.1 | ProteinID:AEK01319.1 |
| ArrayExpress:ATMG00270 | EnsemblPlantsGene:ATMG00270 | RefSeq:ATMG00270 | TAIR:ATMG00270 | RefSeq:ATMG00270-TAIR-G | EnsemblPlants:ATMG00270.1 |
| TAIR:ATMG00270.1 | ProteinID:DAB41505.1 | UniProt:G1C2Y0 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008137 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0031966 | GO:GO:0055114 |
| GO:GO:0070469 | Symbol:NAD6 | InterPro:NADH_UbQ/plastoQ_OxRdtase_su6 | RefSeq:NP_085495.1 | PFAM:PF00499 | PANTHER:PTHR33269 |
| PANTHER:PTHR33269:SF4 | TMHMM:TMhelix | UniParc:UPI0000130844 | SEG:seg | : | : |
Description
NAD6NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:G1C2Y0]
Coordinates
chrMt:-:76642..77259
Molecular Weight (calculated)
23495.5 Da
IEP (calculated)
10.244
GRAVY (calculated)
0.677
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MILSVLSSPA LVSGLMVARA KNPVHSVLFP IPVFRDTSGL LLLLGLDFFA MIFPVVHIGA IAVSFLFVVM MFHIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.