Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G040850.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 39.09 | 96.63 |
| TraesCS7D01G285400.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 40.45 | 94.68 |
| HORVU7Hr1G044360.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 37.27 | 92.13 |
| HORVU1Hr1G009350.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 36.82 | 91.01 |
| HORVU0Hr1G037060.1 | Barley | endoplasmic reticulum | 84.55 | 90.29 |
| BAC19862 | Rice | plasma membrane | 83.18 | 89.27 |
| ATMG00270.1 | Thale cress | plasma membrane | 82.27 | 88.29 |
| TraesCS2B01G283400.1 | Wheat | mitochondrion | 80.91 | 88.12 |
| HORVU3Hr1G044970.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 19.09 | 87.5 |
| TraesCS3D01G386900.1 | Wheat | mitochondrion | 79.55 | 86.63 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, plasma membrane | 79.55 | 84.54 |
| KRH45920 | Soybean | plasma membrane, vacuole | 83.18 | 83.56 |
| HORVU5Hr1G042680.1 | Barley | mitochondrion, plasma membrane | 75.45 | 83.42 |
| TraesCS1A01G097900.1 | Wheat | plasma membrane | 79.55 | 81.4 |
| HORVU6Hr1G037090.1 | Barley | cytosol, plastid, vacuole | 50.0 | 80.88 |
| TraesCS1B01G458600.1 | Wheat | mitochondrion, plasma membrane | 86.82 | 77.33 |
| TraesCS7A01G526200.1 | Wheat | mitochondrion, plasma membrane | 85.91 | 76.52 |
| TraesCS6B01G464600.1 | Wheat | mitochondrion, plasma membrane | 85.45 | 76.11 |
| TraesCS7D01G286400.1 | Wheat | mitochondrion, plasma membrane | 85.0 | 75.4 |
| TraesCS2B01G284000.1 | Wheat | mitochondrion, plasma membrane | 84.55 | 75.3 |
| TraesCS5B01G388600.1 | Wheat | mitochondrion, plasma membrane | 84.55 | 75.3 |
| TraesCS7A01G238000.1 | Wheat | mitochondrion | 84.55 | 74.4 |
| KXG19687 | Sorghum | mitochondrion | 46.82 | 74.1 |
| TraesCS4B01G238300.1 | Wheat | mitochondrion, plasma membrane | 86.36 | 73.93 |
| BAV58153 | Barley | mitochondrion, plasma membrane | 85.45 | 60.26 |
| TraesCS2D01G247500.1 | Wheat | mitochondrion, plasma membrane | 80.45 | 59.6 |
| TraesCS7B01G051500.1 | Wheat | mitochondrion, plasma membrane | 84.55 | 59.24 |
| Solyc10g045730.1.1 | Tomato | mitochondrion | 33.18 | 58.87 |
| Zm00001d035824_P001 | Maize | cytosol, plasma membrane, vacuole | 26.82 | 47.2 |
| OQU75662 | Sorghum | mitochondrion, plasma membrane | 36.36 | 35.71 |
| OQU77742 | Sorghum | mitochondrion | 36.36 | 26.32 |
Protein Annotations
| Gene3D:1.20.120.1200 | MapMan:2.4.1.3.7 | ProteinID:CAA66370.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0008137 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0055114 | EnsemblPlantsGene:GRMZM5G897755 |
| EnsemblPlants:GRMZM5G897755_P01 | EnsemblPlants:GRMZM5G897755_T01 | InterPro:NADH_UbQ/plastoQ_OxRdtase_su6 | UniProt:P92799 | PFAM:PF00499 | PANTHER:PTHR33269 |
| PANTHER:PTHR33269:SF4 | TMHMM:TMhelix | UniParc:UPI00000911D2 | : | : | : |
Description
NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:P92799]
Coordinates
chrMt:+:565003..565665
Molecular Weight (calculated)
24894.0 Da
IEP (calculated)
9.407
GRAVY (calculated)
0.582
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MILSVLSSPA LVSGLMVVRA KNPVHSVLFP ILVFCDTSGL LILLGLDFSA MIFPVVHIGA IAVSFLFVVM MFNIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNETI PLLPTHRNTT SLKYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVSSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNALDS RRTTIHIQNR
201: RFFSHKGDDA PVPPADPESI
101: MFFILDNETI PLLPTHRNTT SLKYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVSSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNALDS RRTTIHIQNR
201: RFFSHKGDDA PVPPADPESI
001: MILSVLSSPA LVSGLMVARA KNPVHSVLFP IPVFRDTSGL LLLLGLDFFA MIFPVVHIGA IAVSFLFVVM MFHIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
Arabidopsis Description
NAD6NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:G1C2Y0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.