CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
extracellular 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G037060.1	Barley	endoplasmic reticulum	65.38	99.03
HORVU3Hr1G040850.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	28.21	98.88
HORVU7Hr1G044360.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	27.56	96.63
HORVU1Hr1G009350.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	27.24	95.51
HORVU5Hr1G042680.1	Barley	mitochondrion, plasma membrane	60.9	95.48
TraesCS3D01G386900.1	Wheat	mitochondrion	60.9	94.06
HORVU6Hr1G037090.1	Barley	cytosol, plastid, vacuole	40.71	93.38
TraesCS5B01G388600.1	Wheat	mitochondrion, plasma membrane	71.15	89.88
BAC19862	Rice	plasma membrane	58.97	89.76
ATMG00270.1	Thale cress	plasma membrane	58.01	88.29
GRMZM5G897755_P01	Maize	plasma membrane	60.26	85.45
HORVU3Hr1G044970.1	Barley	endoplasmic reticulum, extracellular, vacuole	13.14	85.42
TraesCS4B01G238300.1	Wheat	mitochondrion, plasma membrane	70.19	85.21
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	55.77	84.06
KXG19687	Sorghum	mitochondrion	37.18	83.45
KRH45920	Soybean	plasma membrane, vacuole	58.01	82.65
Solyc10g045730.1.1	Tomato	mitochondrion	25.96	65.32
OQU75662	Sorghum	mitochondrion, plasma membrane	30.77	42.86
OQU77742	Sorghum	mitochondrion	32.05	32.89

Protein Annotations

Gene3D:1.20.120.1200	MapMan:2.4.1.3.7	GO:A0A191TDJ8	UniProt:A0A191TDJ8	ProteinID:ANI86442.1	ENA:AP017301.1:CDS:413200..414138
EnsemblPlants:BAV58153	ProteinID:BAV58153	ProteinID:BAV58153.1	EnsemblPlantsGene:EPlHVUG00000039849	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114
InterPro:NADH_UbQ/plastoQ_OxRdtase_su6	PFAM:PF00499	PANTHER:PTHR33269	PANTHER:PTHR33269:SF4	TMHMM:TMhelix	UniParc:UPI0007F13A3A

Description

nad6NADH dehydrogenase subunit 6

Coordinates

chrMt:+:413200..414138

Molecular Weight (calculated)

35593.3 Da

IEP (calculated)

10.269

GRAVY (calculated)

0.295

Length

312 amino acids

Sequence
(BLAST)

001: MRLLAPAFKF HFKGGRRTMI LSVLSSPALV SGLMVVRAKN PVHSVLFPIL VFCDTSGLLI LLGLDFSAMI SPVVHIGAIA VSFLFVVMMF NIQIAEIHEE
101: VLRYLPVSGI IGLIFWWEMF FILDNETIPL LPTHRNTTSL RYTVYAGKVR SWTNLETLGN LLYTYYSVWF LVSSLILLVA MIGAIVLTMH KTTEVKRQDV
201: FRRNALDSRR NIMRSMTIPN GSRRCFSSGA GGPPENYKET FKRWILCSEY RDFPGLKSNI DKLIAFLSPS EILFMVHTFP RDFPLLEILE PRDIREIIAH
301: SHKQWKPPKK GG

Best Arabidopsis Sequence Match ( ATMG00270.1 )
(BLAST)

001: MILSVLSSPA LVSGLMVARA KNPVHSVLFP IPVFRDTSGL LLLLGLDFFA MIFPVVHIGA IAVSFLFVVM MFHIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY

Arabidopsis Description

NAD6NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:G1C2Y0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.