Factsheet for TraesCS4B01G238300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G386900.1	Wheat	mitochondrion	75.88	96.53
TraesCS2B01G283400.1	Wheat	mitochondrion	75.49	96.04
TraesCS1B01G458600.1	Wheat	mitochondrion, plasma membrane	91.05	94.74
TraesCS6B01G464600.1	Wheat	mitochondrion, plasma membrane	89.88	93.52
HORVU5Hr1G042680.1	Barley	mitochondrion, plasma membrane	71.98	92.96
TraesCS5B01G388600.1	Wheat	mitochondrion, plasma membrane	88.72	92.31
HORVU0Hr1G037060.1	Barley	endoplasmic reticulum	73.54	91.75
TraesCS2B01G284000.1	Wheat	mitochondrion, plasma membrane	87.94	91.5
BAC19862	Rice	plasma membrane	72.37	90.73
ATMG00270.1	Thale cress	plasma membrane	71.21	89.27
GRMZM5G897755_P01	Maize	plasma membrane	73.93	86.36
KXG19687	Sorghum	mitochondrion	46.3	85.61
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	68.48	85.02
KRH45920	Soybean	plasma membrane, vacuole	70.43	82.65
TraesCS7B01G051500.1	Wheat	mitochondrion, plasma membrane	89.49	73.25
BAV58153	Barley	mitochondrion, plasma membrane	85.21	70.19
Solyc10g045730.1.1	Tomato	mitochondrion	31.13	64.52
OQU75662	Sorghum	mitochondrion, plasma membrane	37.35	42.86
OQU77742	Sorghum	mitochondrion	37.74	31.91
TraesCS3B01G301300.1	Wheat	extracellular	6.61	9.44

Protein Annotations

EnsemblPlants:TraesCS4B01G238300.1	EnsemblPlantsGene:TraesCS4B01G238300	Gene3D:1.20.120.1200	GO:GO:0003674	GO:GO:0003824	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:NADH_UbQ/plastoQ_OxRdtase_su6	PANTHER:PTHR33269	PANTHER:PTHR33269:SF4
PFAM:PF00499	TMHMM:TMhelix	MapMan:2.4.1.3.7	:	:	:

Description

No Description!

Coordinates

chr4B:+:495567951..495568724

Molecular Weight (calculated)

28916.2 Da

IEP (calculated)

11.222

GRAVY (calculated)

0.525

Length

257 amino acids

Sequence
(BLAST)

001: MRLLAPAFKF HFKGGRRTMI LSVLSSPALV SGLMVVRAKN PVHSVLFPIL VFCDTSGLLI LLGLDFSAMI SPVVHIGAIA VSFLFVVMMF NIQIAEIHEE
101: VLRYLLVSGI IGLIFWWEMF FILDNETIPL LPTHRNTTSL RYTVYAGKVR SWTNLETLGN LLYTYYSVWF LVSSLILLVA MIGAIVLTMH RTTKVKRQDV
201: FRRNALDSRS HIMNRTISPF GHSHRRSFSS GAGGRLTITK KPLKCGFSAQ NIRISLA

Best Arabidopsis Sequence Match ( ATMG00270.1 )
(BLAST)

001: MILSVLSSPA LVSGLMVARA KNPVHSVLFP IPVFRDTSGL LLLLGLDFFA MIFPVVHIGA IAVSFLFVVM MFHIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY

Arabidopsis Description

NAD6NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:G1C2Y0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.