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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • extracellular 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane
Any Predictor:extracellular, mitochondrion, plasma membrane, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
Predotar:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU3Hr1G040850.1 Barley endoplasmic reticulum, extracellular, plasma membrane 41.71 93.26
HORVU7Hr1G044360.1 Barley endoplasmic reticulum, extracellular, plasma membrane 41.71 93.26
HORVU1Hr1G009350.1 Barley endoplasmic reticulum, extracellular, plasma membrane 40.2 89.89
TraesCS3D01G386900.1 Wheat mitochondrion 89.45 88.12
HORVU0Hr1G037060.1 Barley endoplasmic reticulum 85.93 83.01
HORVU3Hr1G044970.1 Barley endoplasmic reticulum, extracellular, vacuole 19.6 81.25
KXG19687 Sorghum mitochondrion 55.28 79.14
BAC19862 Rice plasma membrane 81.41 79.02
ATMG00270.1 Thale cress plasma membrane 79.4 77.07
GRMZM5G897755_P01 Maize plasma membrane 83.42 75.45
GSMUA_AchrUn_... Banana endoplasmic reticulum, plasma membrane 77.39 74.4
HORVU6Hr1G037090.1 Barley cytosol, plastid, vacuole 50.75 74.26
TraesCS5B01G388600.1 Wheat mitochondrion, plasma membrane 90.95 73.28
KRH45920 Soybean plasma membrane, vacuole 79.9 72.6
TraesCS4B01G238300.1 Wheat mitochondrion, plasma membrane 92.96 71.98
Solyc10g045730.1.1 Tomato mitochondrion 39.2 62.9
BAV58153 Barley mitochondrion, plasma membrane 95.48 60.9
OQU75662 Sorghum mitochondrion, plasma membrane 45.23 40.18
OQU77742 Sorghum mitochondrion 44.22 28.95
Protein Annotations
EnsemblPlants:HORVU5Hr1G042680.1EnsemblPlantsGene:HORVU5Hr1G042680Gene3D:1.20.120.1200GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0008137GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016491
GO:GO:0055114InterPro:NADH_UbQ/plastoQ_OxRdtase_su6PANTHER:PTHR33269PANTHER:PTHR33269:SF4PFAM:PF00499SEG:seg
TMHMM:TMhelixUniParc:UPI000B468255UniProt:A0A287QZ72MapMan:2.4.1.3.7::
Description
No Description!
Coordinates
chrchr5H:+:326791844..326792463
Molecular Weight (calculated)
22363.2 Da
IEP (calculated)
9.105
GRAVY (calculated)
0.865
Length
199 amino acids
Sequence
(BLAST)
001: MRLLAPAFKF HFKGGRRTMI LSVLSSHALV SGLMVVCAKN PVHSVLFPIL VFCNTSGLLI LLGLDFSAMI SLVVHIGAIV VSFIFVVMMF NIQIAEIHEE
101: VLRYLPVSGI IGLIFWSEIF FILDNETIPL LPTHRNTTSL RYTVYAGKVR SWTNLETLGN LLYTYYSVWF LVSSLILLVA MIGAIVLTMH KTTEVQRQD
Best Arabidopsis Sequence Match ( ATMG00270.1 )
(BLAST)
001: MILSVLSSPA LVSGLMVARA KNPVHSVLFP IPVFRDTSGL LLLLGLDFFA MIFPVVHIGA IAVSFLFVVM MFHIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY
Arabidopsis Description
NAD6NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:G1C2Y0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.