Factsheet for TraesCS1B01G458600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G040850.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	35.63	98.88
TraesCS6B01G464600.1	Wheat	mitochondrion, plasma membrane	97.98	97.98
TraesCS5B01G388600.1	Wheat	mitochondrion, plasma membrane	96.76	96.76
TraesCS2B01G283400.1	Wheat	mitochondrion	78.54	96.04
TraesCS2B01G284000.1	Wheat	mitochondrion, plasma membrane	95.95	95.95
HORVU7Hr1G044360.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	34.01	94.38
HORVU1Hr1G009350.1	Barley	endoplasmic reticulum, extracellular, plasma membrane	33.6	93.26
BAC19862	Rice	plasma membrane	75.71	91.22
TraesCS4B01G238300.1	Wheat	mitochondrion, plasma membrane	94.74	91.05
ATMG00270.1	Thale cress	plasma membrane	74.49	89.76
HORVU3Hr1G044970.1	Barley	endoplasmic reticulum, extracellular, vacuole	17.41	89.58
GRMZM5G897755_P01	Maize	plasma membrane	77.33	86.82
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, plasma membrane	71.66	85.51
KXG19687	Sorghum	mitochondrion	47.37	84.17
KRH45920	Soybean	plasma membrane, vacuole	73.68	83.11
HORVU6Hr1G037090.1	Barley	cytosol, plastid, vacuole	45.75	83.09
TraesCS7B01G051500.1	Wheat	mitochondrion, plasma membrane	97.57	76.75
TraesCS2D01G247500.1	Wheat	mitochondrion, plasma membrane	91.5	76.09
Solyc10g045730.1.1	Tomato	mitochondrion	32.79	65.32
OQU75662	Sorghum	mitochondrion, plasma membrane	38.46	42.41
OQU77742	Sorghum	mitochondrion	38.87	31.58
TraesCS3B01G301300.1	Wheat	extracellular	6.88	9.44

Protein Annotations

EnsemblPlants:TraesCS1B01G458600.1	EnsemblPlantsGene:TraesCS1B01G458600	Gene3D:1.20.120.1200	GO:GO:0003674	GO:GO:0003824	GO:GO:0008137
GO:GO:0008150	GO:GO:0008152	GO:GO:0055114	InterPro:NADH_UbQ/plastoQ_OxRdtase_su6	PANTHER:PTHR33269	PANTHER:PTHR33269:SF4
PFAM:PF00499	TMHMM:TMhelix	MapMan:2.4.1.3.7	:	:	:

Description

No Description!

Coordinates

chr1B:+:672541211..672541954

Molecular Weight (calculated)

27995.8 Da

IEP (calculated)

10.572

GRAVY (calculated)

0.460

Length

247 amino acids

Sequence
(BLAST)

001: MRLLAPAFKF HFNGGRRTMI LSVLSSPALV SGLMVVRAKN PVHSVLFPIL VFCDTSGLLI LLGLDFSAMI SPVVHIGAIA VSFLFVVMMF NIQIAEIHEE
101: VLRYLPVSGI IGLIFWWEMF FILDNETIPL LPTHRNTTSL RYTVYAGKVR SWTNLETLGN LLYTYYSVWF LVSSLILLVA MIGAIVLTMH RTTKVKRQDV
201: FRRNALDSRS HIMNRTISPF GHSHRRSFSS GAGGPPDNYK ETFKMWI

Best Arabidopsis Sequence Match ( ATMG00270.1 )
(BLAST)

001: MILSVLSSPA LVSGLMVARA KNPVHSVLFP IPVFRDTSGL LLLLGLDFFA MIFPVVHIGA IAVSFLFVVM MFHIQIAEIH EEVLRYLPVS GIIGLIFWWE
101: MFFILDNESI PLLPTQRNTT SLRYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVPSLILL VAMIGAIVLT MHRTTKVKRQ DVFRRNAIDF RRTIMRRTTD
201: PLTIY

Arabidopsis Description

NAD6NADH-ubiquinone oxidoreductase chain 6 [Source:UniProtKB/TrEMBL;Acc:G1C2Y0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.