Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13690.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT1G13690.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT1G13690.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G368600.1 | Wheat | nucleus | 55.22 | 45.4 |
| Zm00001d013750_P001 | Maize | extracellular, mitochondrion | 52.99 | 43.03 |
| EER91257 | Sorghum | cytosol, nucleus, plastid | 52.99 | 42.26 |
| Solyc04g005350.2.1 | Tomato | nucleus | 49.25 | 39.52 |
| GSMUA_Achr4P23500_001 | Banana | nucleus | 50.0 | 39.18 |
| KRH70956 | Soybean | nucleus | 49.25 | 38.37 |
| KRH75093 | Soybean | cytosol | 48.51 | 37.79 |
| VIT_05s0102g00560.t01 | Wine grape | cytosol | 47.76 | 36.99 |
| AT1G13690.1 | Thale cress | cytosol | 47.76 | 36.16 |
| Bra040722.1-P | Field mustard | nucleus | 47.76 | 36.16 |
| CDX98121 | Canola | cytosol | 47.76 | 36.16 |
| VIT_05s0102g00650.t01 | Wine grape | nucleus | 40.3 | 32.14 |
| PGSC0003DMT400004879 | Potato | nucleus | 49.25 | 31.58 |
| CDY36401 | Canola | cytosol | 47.76 | 23.62 |
| TraesCS7A01G179700.1 | Wheat | nucleus | 22.39 | 11.76 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G136300.1 | EnsemblPlantsGene:TraesCS2A01G136300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PFAM:PF00076 |
| PFscan:PS50102 | SUPFAM:SSF54928 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:82187059..82187574
Molecular Weight (calculated)
15198.4 Da
IEP (calculated)
9.363
GRAVY (calculated)
-0.137
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMHRWTGGG GGEKILHAVF VQSWFKEIKG VKRPLDQATQ KHCSFGFFTF LERENTATAM DNMDGAEFFG RVLTVNYTFP EKIKGGEQGW AAQPGMSCVP
101: CFSSVQLRYA LLSCLRTWLL DTRVRAAKCF SYLV
101: CFSSVQLRYA LLSCLRTWLL DTRVRAAKCF SYLV
001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
Arabidopsis Description
ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.