Factsheet for Zm00001d013750_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91257	Sorghum	cytosol, nucleus, plastid	100.0	98.21
TraesCS6D01G352100.1	Wheat	nucleus	87.88	88.96
TraesCS6B01G404500.1	Wheat	nucleus	87.88	88.96
TraesCS6A01G368600.1	Wheat	nucleus	87.88	88.96
GSMUA_Achr4P23500_001	Banana	nucleus	89.09	85.96
Os03t0600400-01	Rice	cytosol, mitochondrion	27.27	83.33
VIT_05s0102g00560.t01	Wine grape	cytosol	85.45	81.5
Solyc04g005350.2.1	Tomato	nucleus	82.42	81.44
KRH70956	Soybean	nucleus	81.82	78.49
VIT_05s0102g00650.t01	Wine grape	nucleus	78.79	77.38
KRH75093	Soybean	cytosol	80.0	76.74
HORVU6Hr1G087100.1	Barley	nucleus	87.88	75.52
Bra040722.1-P	Field mustard	nucleus	76.97	71.75
CDX98121	Canola	cytosol	76.36	71.19
AT1G13690.1	Thale cress	cytosol	75.76	70.62
PGSC0003DMT400004879	Potato	nucleus	82.42	65.07
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	43.03	52.99
CDY36401	Canola	cytosol	76.36	46.49
TraesCS7A01G179700.1	Wheat	nucleus	17.58	11.37

Protein Annotations

EntrezGene:100216777	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:AQK64289.1	UniProt:B4FJP1	EMBL:BT037329
ncoils:Coil	InterPro:Cyclophilin-type_PPIase	EMBL:EU965621	EMBL:EU970534	GO:GO:0000413	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	InterPro:PPIE_RRM	PFscan:PS50102	PANTHER:PTHR11071
PANTHER:PTHR11071:SF319	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B7206
EnsemblPlantsGene:Zm00001d013750	EnsemblPlants:Zm00001d013750_P001	EnsemblPlants:Zm00001d013750_T001	SEG:seg	:	:

Description

ATPase E1

Coordinates

chr5:+:19222627..19225400

Molecular Weight (calculated)

18578.7 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.714

Length

165 amino acids

Sequence
(BLAST)

001: MNQPVQKNTL YVGGLAEEVD EKILHAAFVP FGEVKDVKTP LDQSTQKHRS FGFVTFLERE DAAAAMDNMD GAELFGRVLT VNYAFPERIK GGEQGWAAQP
101: IWADADTWFE RQQQEEEMQR LQAEHRAAMQ AAEKLHREKL AAEREGEKEE DPMAAAEAQA VKQSS

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.