Factsheet for GSMUA_Achr4P23500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91257	Sorghum	cytosol, nucleus, plastid	87.72	89.29
Zm00001d013750_P001	Maize	extracellular, mitochondrion	85.96	89.09
VIT_05s0102g00560.t01	Wine grape	cytosol	88.89	87.86
Solyc04g005350.2.1	Tomato	nucleus	84.21	86.23
KRH70956	Soybean	nucleus	84.21	83.72
KRH75093	Soybean	cytosol	83.04	82.56
TraesCS6D01G352100.1	Wheat	nucleus	78.36	82.21
TraesCS6B01G404500.1	Wheat	nucleus	78.36	82.21
TraesCS6A01G368600.1	Wheat	nucleus	78.36	82.21
VIT_05s0102g00650.t01	Wine grape	nucleus	79.53	80.95
Bra040722.1-P	Field mustard	nucleus	78.95	76.27
CDX98121	Canola	cytosol	78.95	76.27
Os03t0600400-01	Rice	cytosol, mitochondrion	23.98	75.93
AT1G13690.1	Thale cress	cytosol	77.78	75.14
HORVU6Hr1G087100.1	Barley	nucleus	78.36	69.79
PGSC0003DMT400004879	Potato	nucleus	84.21	68.9
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	39.18	50.0
CDY36401	Canola	cytosol	78.36	49.45
TraesCS7A01G179700.1	Wheat	nucleus	16.37	10.98

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	ncoils:Coil	InterPro:Cyclophilin-type_PPIase	GO:GO:0000413	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G23500_001	EnsemblPlants:GSMUA_Achr4P23500_001
EnsemblPlants:GSMUA_Achr4T23500_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0SRG1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
InterPro:PPIE_RRM	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF319	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029534A0	SEG:seg	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G23500_001]

Coordinates

chr4:-:23559334..23561756

Molecular Weight (calculated)

19349.5 Da

IEP (calculated)

4.321

GRAVY (calculated)

-0.710

Length

171 amino acids

Sequence
(BLAST)

001: MNYPVQKNTL YVGGLAEEVN EAILHSAFIP FGDIKDVKTP LDQATQKHRS FGFVTFLERE DAAAAMDNMD GAELYGRVLT VNYAFPERIK GGEQGWAAQP
101: IWADADTWFE RQQQEEEMQR LQAEHQAAMR AAEELHRKKL AEEREGEKEE ETEKMADPMA AAEAEVLTQS S

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.