Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13690.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT1G13690.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT1G13690.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G352100.1 | Wheat | nucleus | 99.39 | 99.39 |
| TraesCS6A01G368600.1 | Wheat | nucleus | 99.39 | 99.39 |
| Zm00001d013750_P001 | Maize | extracellular, mitochondrion | 88.96 | 87.88 |
| EER91257 | Sorghum | cytosol, nucleus, plastid | 89.57 | 86.9 |
| HORVU6Hr1G087100.1 | Barley | nucleus | 99.39 | 84.38 |
| Solyc04g005350.2.1 | Tomato | nucleus | 82.82 | 80.84 |
| GSMUA_Achr4P23500_001 | Banana | nucleus | 82.21 | 78.36 |
| VIT_05s0102g00560.t01 | Wine grape | cytosol | 80.98 | 76.3 |
| KRH70956 | Soybean | nucleus | 79.14 | 75.0 |
| KRH75093 | Soybean | cytosol | 78.53 | 74.42 |
| VIT_05s0102g00650.t01 | Wine grape | nucleus | 73.62 | 71.43 |
| AT1G13690.1 | Thale cress | cytosol | 75.46 | 69.49 |
| CDX98121 | Canola | cytosol | 75.46 | 69.49 |
| Bra040722.1-P | Field mustard | nucleus | 75.46 | 69.49 |
| PGSC0003DMT400004879 | Potato | nucleus | 83.44 | 65.07 |
| Os03t0600400-01 | Rice | cytosol, mitochondrion | 20.25 | 61.11 |
| CDY36401 | Canola | cytosol | 75.46 | 45.39 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | ncoils:Coil | InterPro:Cyclophilin-type_PPIase | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | InterPro:PPIE_RRM | PFscan:PS50102 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF319 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS6B01G404500 | EnsemblPlants:TraesCS6B01G404500.1 | TIGR:cd12347 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:680080725..680084613
Molecular Weight (calculated)
18284.3 Da
IEP (calculated)
4.369
GRAVY (calculated)
-0.670
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQPVQKNTL YVGGLAEEVD EKILHAAFVP FGEVKDVKTP LDQATQKHRS FGFVTFLERE DAAAAMDNMD GAELFGRVLT VNYAFPEKIK GGEQGWAAQP
101: VWADADTWFE RQQQEEEMKR LQTEQNAAMK EAERLHREKI AAEKNGETDE ADPMAVAEAQ AVN
101: VWADADTWFE RQQQEEEMKR LQTEQNAAMK EAERLHREKI AAEKNGETDE ADPMAVAEAQ AVN
001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
Arabidopsis Description
ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.