Factsheet for Solyc04g005350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P23500_001	Banana	nucleus	86.23	84.21
KRH70956	Soybean	nucleus	86.23	83.72
VIT_05s0102g00560.t01	Wine grape	cytosol	86.23	83.24
TraesCS6D01G352100.1	Wheat	nucleus	80.84	82.82
TraesCS6A01G368600.1	Wheat	nucleus	80.84	82.82
TraesCS6B01G404500.1	Wheat	nucleus	80.84	82.82
KRH75093	Soybean	cytosol	85.03	82.56
Zm00001d013750_P001	Maize	extracellular, mitochondrion	81.44	82.42
EER91257	Sorghum	cytosol, nucleus, plastid	81.44	80.95
PGSC0003DMT400004879	Potato	nucleus	99.4	79.43
VIT_05s0102g00650.t01	Wine grape	nucleus	79.04	78.57
AT1G13690.1	Thale cress	cytosol	80.24	75.71
CDX98121	Canola	cytosol	80.24	75.71
Bra040722.1-P	Field mustard	nucleus	79.64	75.14
HORVU6Hr1G087100.1	Barley	nucleus	80.84	70.31
Os03t0600400-01	Rice	cytosol, mitochondrion	19.76	61.11
CDY36401	Canola	cytosol	80.24	49.45
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	39.52	49.25
TraesCS7A01G179700.1	Wheat	nucleus	17.37	11.37

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	ncoils:Coil	InterPro:Cyclophilin-type_PPIase	GO:GO:0000413	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000504	InterPro:IPR012677
UniProt:K4BNE1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	InterPro:PPIE_RRM	PFscan:PS50102	PANTHER:PTHR11071
PANTHER:PTHR11071:SF319	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc04g005350.2
EnsemblPlants:Solyc04g005350.2.1	UniParc:UPI00027661CA	:	:	:	:

Description

No Description!

Coordinates

chr4:-:253441..256670

Molecular Weight (calculated)

18841.0 Da

IEP (calculated)

4.406

GRAVY (calculated)

-0.734

Length

167 amino acids

Sequence
(BLAST)

001: MNQAVQKNTL YVGGLAEEVN EAILHAAFIP FGDIKDVKTP LDHATQKHRS FGFVTFLERE DASAAMDNMD GAELYGRVLT VNYALPEKIK GGEQGWAAQP
101: IWADADTWFE RQQQEEEMKR LQEEQKAAMQ VAEDLHRKKM AEEREGEKDE DPMATAEAEV LKQNATS

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.