Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| OQU92006 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13690.1 | OQU92006 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013750_P001 | Maize | extracellular, mitochondrion | 98.21 | 100.0 |
| TraesCS6D01G352100.1 | Wheat | nucleus | 86.9 | 89.57 |
| TraesCS6B01G404500.1 | Wheat | nucleus | 86.9 | 89.57 |
| TraesCS6A01G368600.1 | Wheat | nucleus | 86.9 | 89.57 |
| Os03t0600400-01 | Rice | cytosol, mitochondrion | 28.57 | 88.89 |
| GSMUA_Achr4P23500_001 | Banana | nucleus | 89.29 | 87.72 |
| VIT_05s0102g00560.t01 | Wine grape | cytosol | 84.52 | 82.08 |
| Solyc04g005350.2.1 | Tomato | nucleus | 80.95 | 81.44 |
| KRH70956 | Soybean | nucleus | 80.95 | 79.07 |
| VIT_05s0102g00650.t01 | Wine grape | nucleus | 77.98 | 77.98 |
| KRH75093 | Soybean | cytosol | 79.17 | 77.33 |
| HORVU6Hr1G087100.1 | Barley | nucleus | 86.9 | 76.04 |
| Bra040722.1-P | Field mustard | nucleus | 76.19 | 72.32 |
| CDX98121 | Canola | cytosol | 75.6 | 71.75 |
| AT1G13690.1 | Thale cress | cytosol | 75.0 | 71.19 |
| PGSC0003DMT400004879 | Potato | nucleus | 80.95 | 65.07 |
| TraesCS2A01G136300.1 | Wheat | cytosol, nucleus, plastid | 42.26 | 52.99 |
| CDY36401 | Canola | cytosol | 75.6 | 46.86 |
| TraesCS7A01G179700.1 | Wheat | nucleus | 17.26 | 11.37 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:8062535 | UniProt:C5WT87 | ncoils:Coil | InterPro:Cyclophilin-type_PPIase |
| EnsemblPlants:EER91257 | ProteinID:EER91257 | ProteinID:EER91257.1 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006457 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OQU91399.1 | PFAM:PF00076 | InterPro:PPIE_RRM | PFscan:PS50102 | PANTHER:PTHR11071 |
| PANTHER:PTHR11071:SF319 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | EnsemblPlantsGene:SORBI_3001G172800 | SUPFAM:SSF54928 |
| unigene:Sbi.13293 | UniParc:UPI0001A8222C | RefSeq:XP_002464259.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:+:14486509..14490888
Molecular Weight (calculated)
18880.0 Da
IEP (calculated)
4.461
GRAVY (calculated)
-0.715
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQPVQKNTL YVGGLAEEVD EKILHAAFVP FGEVKDVKTP LDQSTQKHRS FGFVTFLERE DAAAAMDNMD GAELFGRVLT VNYAFPERIK GGEQGWAAQP
101: IWADADTWFE RQQQEEEMQR LQAEHRAAMQ AAEKLHREKL AAEREGEKEE ETADPMAAAE AQAVKQSS
101: IWADADTWFE RQQQEEEMQR LQAEHRAAMQ AAEKLHREKL AAEREGEKEE ETADPMAAAE AQAVKQSS
001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
Arabidopsis Description
ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.