Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13690.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT1G13690.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT1G13690.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G352100.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS6B01G404500.1 | Wheat | nucleus | 99.39 | 99.39 |
| Zm00001d013750_P001 | Maize | extracellular, mitochondrion | 88.96 | 87.88 |
| EER91257 | Sorghum | cytosol, nucleus, plastid | 89.57 | 86.9 |
| HORVU6Hr1G087100.1 | Barley | nucleus | 100.0 | 84.9 |
| Solyc04g005350.2.1 | Tomato | nucleus | 82.82 | 80.84 |
| GSMUA_Achr4P23500_001 | Banana | nucleus | 82.21 | 78.36 |
| VIT_05s0102g00560.t01 | Wine grape | cytosol | 80.98 | 76.3 |
| KRH70956 | Soybean | nucleus | 79.75 | 75.58 |
| KRH75093 | Soybean | cytosol | 79.14 | 75.0 |
| VIT_05s0102g00650.t01 | Wine grape | nucleus | 73.62 | 71.43 |
| Bra040722.1-P | Field mustard | nucleus | 75.46 | 69.49 |
| CDX98121 | Canola | cytosol | 75.46 | 69.49 |
| AT1G13690.1 | Thale cress | cytosol | 75.46 | 69.49 |
| PGSC0003DMT400004879 | Potato | nucleus | 83.44 | 65.07 |
| Os03t0600400-01 | Rice | cytosol, mitochondrion | 20.25 | 61.11 |
| TraesCS2A01G136300.1 | Wheat | cytosol, nucleus, plastid | 45.4 | 55.22 |
| CDY36401 | Canola | cytosol | 75.46 | 45.39 |
| TraesCS7A01G179700.1 | Wheat | nucleus | 18.4 | 11.76 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | ncoils:Coil | InterPro:Cyclophilin-type_PPIase | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | InterPro:PPIE_RRM | PFscan:PS50102 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF319 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS6A01G368600 | EnsemblPlants:TraesCS6A01G368600.1 | TIGR:cd12347 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:594728873..594733431
Molecular Weight (calculated)
18270.3 Da
IEP (calculated)
4.369
GRAVY (calculated)
-0.672
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQPVQKNTL YVGGLAEEVD EKILHAAFVP FGEVKDVKTP LDQATQKHRS FGFVTFLERE DAAAAMDNMD GAELFGRVLT VNYAFPEKIK GGEQGWAAQP
101: VWADADTWFE RQQQEEEMKR LQTEQNAAMK EAERLHREKV AAEKNGETDE ADPMAVAEAQ AVN
101: VWADADTWFE RQQQEEEMKR LQTEQNAAMK EAERLHREKV AAEKNGETDE ADPMAVAEAQ AVN
001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
Arabidopsis Description
ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.