Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13690.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G352100.1 | Wheat | nucleus | 84.9 | 100.0 |
| TraesCS6A01G368600.1 | Wheat | nucleus | 84.9 | 100.0 |
| TraesCS6B01G404500.1 | Wheat | nucleus | 84.38 | 99.39 |
| Zm00001d013750_P001 | Maize | extracellular, mitochondrion | 75.52 | 87.88 |
| EER91257 | Sorghum | cytosol, nucleus, plastid | 76.04 | 86.9 |
| Solyc04g005350.2.1 | Tomato | nucleus | 70.31 | 80.84 |
| GSMUA_Achr4P23500_001 | Banana | nucleus | 69.79 | 78.36 |
| VIT_05s0102g00560.t01 | Wine grape | cytosol | 68.75 | 76.3 |
| KRH70956 | Soybean | nucleus | 68.23 | 76.16 |
| KRH75093 | Soybean | cytosol | 67.71 | 75.58 |
| VIT_05s0102g00650.t01 | Wine grape | nucleus | 62.5 | 71.43 |
| Bra040722.1-P | Field mustard | nucleus | 64.58 | 70.06 |
| CDX98121 | Canola | cytosol | 64.58 | 70.06 |
| AT1G13690.1 | Thale cress | cytosol | 64.58 | 70.06 |
| PGSC0003DMT400004879 | Potato | nucleus | 70.83 | 65.07 |
| Os03t0600400-01 | Rice | cytosol, mitochondrion | 17.19 | 61.11 |
| CDY36401 | Canola | cytosol | 64.58 | 45.76 |
| HORVU1Hr1G043050.2 | Barley | cytosol | 8.33 | 10.32 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | UniProt:A0A287V217 | ncoils:Coil | InterPro:Cyclophilin-type_PPIase | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU6Hr1G087100 |
| EnsemblPlants:HORVU6Hr1G087100.1 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | InterPro:PPIE_RRM |
| PFscan:PS50102 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF319 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B47E39F | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:563104166..563109086
Molecular Weight (calculated)
20339.8 Da
IEP (calculated)
4.406
GRAVY (calculated)
-0.560
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: FSGGKEKQIP CFCFPXXXXX XXXXAADAAM NQPVQKNTLY VGGLAEEVDE KILHAAFVPF GEVKDVKTPL DQATQKHRSF GFVTFLERED AAAAMDNMDG
101: AELFGRVLTV NYAFPEKIKG GEQGWAAQPV WADADTWFER QQQEEEMKRL QTEQNAAMKE AERLHREKVA AEKNGETDEA DPMAVAEAQA VN
101: AELFGRVLTV NYAFPEKIKG GEQGWAAQPV WADADTWFER QQQEEEMKRL QTEQNAAMKE AERLHREKVA AEKNGETDEA DPMAVAEAQA VN
001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
Arabidopsis Description
ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.