CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	KRH42483	AT2G01950.1	19000166
AT1G13690.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70956	Soybean	nucleus	97.67	97.67
Solyc04g005350.2.1	Tomato	nucleus	82.56	85.03
VIT_05s0102g00560.t01	Wine grape	cytosol	84.3	83.81
GSMUA_Achr4P23500_001	Banana	nucleus	82.56	83.04
Zm00001d013750_P001	Maize	extracellular, mitochondrion	76.74	80.0
EER91257	Sorghum	cytosol, nucleus, plastid	77.33	79.17
TraesCS6D01G352100.1	Wheat	nucleus	75.0	79.14
TraesCS6A01G368600.1	Wheat	nucleus	75.0	79.14
VIT_05s0102g00650.t01	Wine grape	nucleus	76.74	78.57
Bra040722.1-P	Field mustard	nucleus	80.81	78.53
TraesCS6B01G404500.1	Wheat	nucleus	74.42	78.53
CDX98121	Canola	cytosol	80.23	77.97
AT1G13690.1	Thale cress	cytosol	77.91	75.71
PGSC0003DMT400004879	Potato	nucleus	83.14	68.42
HORVU6Hr1G087100.1	Barley	nucleus	75.58	67.71
Os03t0600400-01	Rice	cytosol, mitochondrion	16.86	53.7
CDY36401	Canola	cytosol	79.65	50.55
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	37.79	48.51
TraesCS7A01G179700.1	Wheat	nucleus	15.7	10.59

Protein Annotations

EntrezGene:100787326	Gene3D:3.30.70.330	MapMan:35.2	EMBL:ACUP02000117	ncoils:Coil	InterPro:Cyclophilin-type_PPIase
EnsemblPlantsGene:GLYMA_01G062300	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000504	InterPro:IPR012677	UniProt:K7K262	EnsemblPlants:KRH75093	ProteinID:KRH75093
ProteinID:KRH75093.1	ProteinID:KRH75094.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	InterPro:PPIE_RRM	PFscan:PS50102
PANTHER:PTHR11071	PANTHER:PTHR11071:SF319	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002337510	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:8637396..8642317

Molecular Weight (calculated)

19542.9 Da

IEP (calculated)

4.297

GRAVY (calculated)

-0.718

Length

172 amino acids

Sequence
(BLAST)

001: MAMMQGVQKN TLYVGGLAEE VNELILHAAF IPFGDIKDVK TPLDQASQKH RSFGFVTFLE REDASAAMDN MDGAELYGRV LTVNYALPER IKGGEQGWAA
101: QPVWADADTW FERQQQEEEM KRIEKENRAA MEAAEDLHRK QVAEQREGEK EEEIEIKDDP MAKAEAEVLQ NQ

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.