Factsheet for VIT_05s0102g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g00650.t01	Wine grape	nucleus	89.6	92.26
GSMUA_Achr4P23500_001	Banana	nucleus	87.86	88.89
KRH70956	Soybean	nucleus	86.13	86.63
Solyc04g005350.2.1	Tomato	nucleus	83.24	86.23
Zm00001d013750_P001	Maize	extracellular, mitochondrion	81.5	85.45
EER91257	Sorghum	cytosol, nucleus, plastid	82.08	84.52
KRH75093	Soybean	cytosol	83.81	84.3
TraesCS6D01G352100.1	Wheat	nucleus	76.3	80.98
TraesCS6B01G404500.1	Wheat	nucleus	76.3	80.98
TraesCS6A01G368600.1	Wheat	nucleus	76.3	80.98
Bra040722.1-P	Field mustard	nucleus	81.5	79.66
CDX98121	Canola	cytosol	80.92	79.1
AT1G13690.1	Thale cress	cytosol	76.88	75.14
PGSC0003DMT400004879	Potato	nucleus	83.24	68.9
HORVU6Hr1G087100.1	Barley	nucleus	76.3	68.75
Os03t0600400-01	Rice	cytosol, mitochondrion	20.23	64.81
CDY36401	Canola	cytosol	80.35	51.29
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	36.99	47.76
TraesCS7A01G179700.1	Wheat	nucleus	15.61	10.59

Protein Annotations

EntrezGene:100261055	wikigene:100261055	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CBI36679	ProteinID:CBI36679.3
ncoils:Coil	InterPro:Cyclophilin-type_PPIase	UniProt:D7U1R3	EMBL:FN596500	GO:GO:0000413	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000504	InterPro:IPR012677
EntrezGene:LOC100261055	wikigene:LOC100261055	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	InterPro:PPIE_RRM	PFscan:PS50102
PANTHER:PTHR11071	PANTHER:PTHR11071:SF319	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI00019834FB	ArrayExpress:VIT_05s0102g00560	EnsemblPlantsGene:VIT_05s0102g00560	EnsemblPlants:VIT_05s0102g00560.t01	RefSeq:XP_002265598	RefSeq:XP_002265598.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:22498647..22500157

Molecular Weight (calculated)

19543.7 Da

IEP (calculated)

4.310

GRAVY (calculated)

-0.808

Length

173 amino acids

Sequence
(BLAST)

001: MNQPVQKNTL YVGGLAEEVN ESILHSAFIP FGDIKDVKTP LDQATQKHRS FGFVTFLEKE DAAAAMDNMD GAELYGRVLT VNYALPERIK GGEQGWAAQP
101: IWADADTWFE RQQQEEEMQR IQAENRAAMQ AAEELHRKKM AQEREGEKDE EVEGKDDPMA RVEAEVLNQS NSS

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.