CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	KRH42483	AT2G01950.1	19000166
AT1G13690.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75093	Soybean	cytosol	97.67	97.67
Solyc04g005350.2.1	Tomato	nucleus	83.72	86.23
VIT_05s0102g00560.t01	Wine grape	cytosol	86.63	86.13
GSMUA_Achr4P23500_001	Banana	nucleus	83.72	84.21
Zm00001d013750_P001	Maize	extracellular, mitochondrion	78.49	81.82
EER91257	Sorghum	cytosol, nucleus, plastid	79.07	80.95
VIT_05s0102g00650.t01	Wine grape	nucleus	78.49	80.36
TraesCS6D01G352100.1	Wheat	nucleus	75.58	79.75
TraesCS6A01G368600.1	Wheat	nucleus	75.58	79.75
TraesCS6B01G404500.1	Wheat	nucleus	75.0	79.14
Bra040722.1-P	Field mustard	nucleus	81.4	79.1
CDX98121	Canola	cytosol	80.81	78.53
AT1G13690.1	Thale cress	cytosol	78.49	76.27
PGSC0003DMT400004879	Potato	nucleus	84.3	69.38
HORVU6Hr1G087100.1	Barley	nucleus	76.16	68.23
Os03t0600400-01	Rice	cytosol, mitochondrion	18.02	57.41
CDY36401	Canola	cytosol	80.23	50.92
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	38.37	49.25
TraesCS7A01G179700.1	Wheat	nucleus	15.7	10.59

Protein Annotations

EntrezGene:100809447	Gene3D:3.30.70.330	MapMan:35.2	EMBL:ACUP02000829	ncoils:Coil	InterPro:Cyclophilin-type_PPIase
EnsemblPlantsGene:GLYMA_02G120500	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	UniProt:I1JEH5	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH70956	ProteinID:KRH70956
ProteinID:KRH70956.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	InterPro:PPIE_RRM	PFscan:PS50102	PANTHER:PTHR11071
PANTHER:PTHR11071:SF319	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002337939
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:11875511..11876683

Molecular Weight (calculated)

19472.8 Da

IEP (calculated)

4.277

GRAVY (calculated)

-0.711

Length

172 amino acids

Sequence
(BLAST)

001: MAMMQGVQKN TLYVGGLAEE VNESILHAAF IPFGDIKDVK TPLDQATQKH RSFGFVTFLE REDASAAMDN MDGAELYGRV LTVNYALPER IKGGEQGWAA
101: QPVWADADTW FERQQQEEEM KRIEAENRAA MQAAEDLHRK QVAEQREGEK EEEIEIKDDP MAKAEAEVLQ NQ

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.