CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	CDY03088	AT2G01950.1	19000166
AT1G13690.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98121	Canola	cytosol	64.94	99.44
Bra040722.1-P	Field mustard	nucleus	64.58	98.87
AT1G13690.1	Thale cress	cytosol	61.99	94.92
VIT_05s0102g00560.t01	Wine grape	cytosol	51.29	80.35
Solyc04g005350.2.1	Tomato	nucleus	49.45	80.24
KRH70956	Soybean	nucleus	50.92	80.23
KRH75093	Soybean	cytosol	50.55	79.65
GSMUA_Achr4P23500_001	Banana	nucleus	49.45	78.36
Zm00001d013750_P001	Maize	extracellular, mitochondrion	46.49	76.36
VIT_05s0102g00650.t01	Wine grape	nucleus	47.23	76.19
EER91257	Sorghum	cytosol, nucleus, plastid	46.86	75.6
TraesCS6A01G368600.1	Wheat	nucleus	45.39	75.46
TraesCS6B01G404500.1	Wheat	nucleus	45.39	75.46
TraesCS6D01G352100.1	Wheat	nucleus	45.39	75.46
HORVU6Hr1G087100.1	Barley	nucleus	45.76	64.58
PGSC0003DMT400004879	Potato	nucleus	49.45	64.11
Os03t0600400-01	Rice	cytosol, mitochondrion	11.07	55.56
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	23.62	47.76
TraesCS7A01G179700.1	Wheat	nucleus	11.44	12.16

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078HF40	UniProt:A0A078HF40	EnsemblPlants:CDY36401	ProteinID:CDY36401
ProteinID:CDY36401.1	ncoils:Coil	InterPro:Cyclophilin-type_PPIase	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00062012001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	InterPro:PPIE_RRM	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF319
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEE5E4	SEG:seg

Description

BnaC05g10020DBnaC05g10020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HF40]

Coordinates

chrLK032375:+:104532..106214

Molecular Weight (calculated)

29993.3 Da

IEP (calculated)

4.604

GRAVY (calculated)

-0.431

Length

271 amino acids

Sequence
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKIQAEN KAAMEAAEEL HRKKLAQDRQ GEMEEDTDVK DDPMARAEAE ALSHDNPQRA GRDKELSCNG KSSIAKWIAL
201: DLDAPVATIA TLAAELMTGK VNVRNPIVFH LEWSHSSLFH HPSDGELCSV AALSTDTLSL MEYICLGNTL T

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.