Factsheet for PGSC0003DMT400004879

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005350.2.1	Tomato	nucleus	79.43	99.4
KRH70956	Soybean	nucleus	69.38	84.3
GSMUA_Achr4P23500_001	Banana	nucleus	68.9	84.21
TraesCS6D01G352100.1	Wheat	nucleus	65.07	83.44
TraesCS6A01G368600.1	Wheat	nucleus	65.07	83.44
TraesCS6B01G404500.1	Wheat	nucleus	65.07	83.44
VIT_05s0102g00560.t01	Wine grape	cytosol	68.9	83.24
KRH75093	Soybean	cytosol	68.42	83.14
Zm00001d013750_P001	Maize	extracellular, mitochondrion	65.07	82.42
EER91257	Sorghum	cytosol, nucleus, plastid	65.07	80.95
VIT_05s0102g00650.t01	Wine grape	nucleus	63.16	78.57
AT1G13690.1	Thale cress	cytosol	64.11	75.71
CDX98121	Canola	cytosol	64.11	75.71
Bra040722.1-P	Field mustard	nucleus	63.64	75.14
HORVU6Hr1G087100.1	Barley	nucleus	65.07	70.83
Os03t0600400-01	Rice	cytosol, mitochondrion	15.79	61.11
CDY36401	Canola	cytosol	64.11	49.45
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	31.58	49.25
TraesCS7A01G179700.1	Wheat	nucleus	13.88	11.37

Protein Annotations

EntrezGene:102602240	Gene3D:3.30.70.330	MapMan:35.2	ncoils:Coil	InterPro:Cyclophilin-type_PPIase	GO:GO:0000413
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000504
InterPro:IPR012677	UniProt:M0ZP52	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400001940	PGSC:PGSC0003DMG400001940
EnsemblPlants:PGSC0003DMT400004879	InterPro:PPIE_RRM	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF319	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002964B15	:	:

Description

Peptidyl-prolyl cis-trans isomerase E [Source:PGSC_GENE;Acc:PGSC0003DMG400001940]

Coordinates

chr00:-:12643319..12647688

Molecular Weight (calculated)

23840.0 Da

IEP (calculated)

4.579

GRAVY (calculated)

-0.756

Length

209 amino acids

Sequence
(BLAST)

001: MNQAVQKNTL YVGGLAEEVN EAILHAAFIP FGDIKDVKTP LDHATQKHRS FGFVTFLERE DASAAMDNMD GAELYGRVLT VNYALPEKIK GGEQGWAAQP
101: IPHKPNKHHL DLELLEHYKY LPGKGYILYR TDDLDDPSQV VEVWADADTW FERQQQEEEM KRLQEEQKAA MQVAEDLHRK KMAEEREGEK DEDPMAMAEA
201: EVLKQNATS

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.