Factsheet for Bra040722.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13690.1	Bra024839.1-P	AT2G01950.1	19000166
AT1G13690.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98121	Canola	cytosol	99.44	99.44
AT1G13690.1	Thale cress	cytosol	93.79	93.79
VIT_05s0102g00560.t01	Wine grape	cytosol	79.66	81.5
KRH70956	Soybean	nucleus	79.1	81.4
KRH75093	Soybean	cytosol	78.53	80.81
Solyc04g005350.2.1	Tomato	nucleus	75.14	79.64
GSMUA_Achr4P23500_001	Banana	nucleus	76.27	78.95
VIT_05s0102g00650.t01	Wine grape	nucleus	73.45	77.38
Zm00001d013750_P001	Maize	extracellular, mitochondrion	71.75	76.97
EER91257	Sorghum	cytosol, nucleus, plastid	72.32	76.19
TraesCS6A01G368600.1	Wheat	nucleus	69.49	75.46
TraesCS6B01G404500.1	Wheat	nucleus	69.49	75.46
TraesCS6D01G352100.1	Wheat	nucleus	69.49	75.46
HORVU6Hr1G087100.1	Barley	nucleus	70.06	64.58
CDY36401	Canola	cytosol	98.87	64.58
PGSC0003DMT400004879	Potato	nucleus	75.14	63.64
Os03t0600400-01	Rice	cytosol, mitochondrion	16.95	55.56
TraesCS2A01G136300.1	Wheat	cytosol, nucleus, plastid	36.16	47.76
TraesCS7A01G179700.1	Wheat	nucleus	17.51	12.16

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EnsemblPlantsGene:Bra040722	EnsemblPlants:Bra040722.1	EnsemblPlants:Bra040722.1-P	ncoils:Coil
InterPro:Cyclophilin-type_PPIase	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4FHZ3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
InterPro:PPIE_RRM	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF319	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253E7E3	SEG:seg	:	:

Description

AT1G13690 (E=2e-081) ATE1 | ATE1; nucleic acid binding / nucleotide binding

Coordinates

chrScaffold000240:-:24071..24847

Molecular Weight (calculated)

19899.2 Da

IEP (calculated)

4.408

GRAVY (calculated)

-0.724

Length

177 amino acids

Sequence
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKIQAEN RAAMEAAEEL HRKKLAQDRQ GEMEEDTEVK DDPMARAEAE ALSHDNP

Best Arabidopsis Sequence Match ( AT1G13690.1 )
(BLAST)

001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

Arabidopsis Description

ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.