Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13690.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT1G13690.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040722.1-P | Field mustard | nucleus | 99.44 | 99.44 |
| AT1G13690.1 | Thale cress | cytosol | 94.35 | 94.35 |
| VIT_05s0102g00560.t01 | Wine grape | cytosol | 79.1 | 80.92 |
| KRH70956 | Soybean | nucleus | 78.53 | 80.81 |
| Solyc04g005350.2.1 | Tomato | nucleus | 75.71 | 80.24 |
| KRH75093 | Soybean | cytosol | 77.97 | 80.23 |
| GSMUA_Achr4P23500_001 | Banana | nucleus | 76.27 | 78.95 |
| VIT_05s0102g00650.t01 | Wine grape | nucleus | 72.88 | 76.79 |
| Zm00001d013750_P001 | Maize | extracellular, mitochondrion | 71.19 | 76.36 |
| EER91257 | Sorghum | cytosol, nucleus, plastid | 71.75 | 75.6 |
| TraesCS6A01G368600.1 | Wheat | nucleus | 69.49 | 75.46 |
| TraesCS6B01G404500.1 | Wheat | nucleus | 69.49 | 75.46 |
| TraesCS6D01G352100.1 | Wheat | nucleus | 69.49 | 75.46 |
| CDY36401 | Canola | cytosol | 99.44 | 64.94 |
| HORVU6Hr1G087100.1 | Barley | nucleus | 70.06 | 64.58 |
| PGSC0003DMT400004879 | Potato | nucleus | 75.71 | 64.11 |
| Os03t0600400-01 | Rice | cytosol, mitochondrion | 16.38 | 53.7 |
| TraesCS2A01G136300.1 | Wheat | cytosol, nucleus, plastid | 36.16 | 47.76 |
| TraesCS7A01G179700.1 | Wheat | nucleus | 17.51 | 12.16 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | GO:A0A078EAC0 | EnsemblPlants:CDX98121 | ProteinID:CDX98121 | ProteinID:CDX98121.1 |
| ncoils:Coil | InterPro:Cyclophilin-type_PPIase | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00105506001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| InterPro:PPIE_RRM | PFscan:PS50102 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF319 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE6899 | SEG:seg | : | : |
Description
BnaA06g08720D
Coordinates
chrLK031902:+:1169278..1170359
Molecular Weight (calculated)
19871.2 Da
IEP (calculated)
4.408
GRAVY (calculated)
-0.720
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKIQAEN KAAMEAAEEL HRKKLAQDRQ GEMEEDTEVK DDPMARAEAE ALSHDNP
101: WAAHPLWADA DTWFERQQQE KEILKIQAEN KAAMEAAEEL HRKKLAQDRQ GEMEEDTEVK DDPMARAEAE ALSHDNP
001: MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
101: WAAHPLWADA DTWFERQQQE KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA
Arabidopsis Description
ATE1ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.