Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G383900.1 | Wheat | cytosol, peroxisome, vacuole | 96.54 | 96.54 |
| TraesCS2B01G404700.1 | Wheat | cytosol, peroxisome, vacuole | 95.24 | 93.22 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane, vacuole | 52.38 | 72.02 |
| GSMUA_Achr11P... | Banana | extracellular, vacuole | 55.84 | 70.11 |
| GSMUA_Achr5P19910_001 | Banana | mitochondrion | 54.55 | 66.32 |
| Zm00001d002820_P001 | Maize | plastid | 69.7 | 65.71 |
| EES12569 | Sorghum | cytosol | 71.43 | 64.96 |
| TraesCS6D01G221100.1 | Wheat | cytosol, peroxisome, vacuole | 64.5 | 64.5 |
| Zm00001d025949_P001 | Maize | vacuole | 68.83 | 61.87 |
| Os04t0538400-01 | Rice | mitochondrion, nucleus, plastid | 64.07 | 59.92 |
| GSMUA_Achr1P20190_001 | Banana | plastid | 59.74 | 58.97 |
| TraesCS2D01G588000.1 | Wheat | cytosol, plasma membrane, vacuole | 45.45 | 54.69 |
| TraesCS2D01G431900.1 | Wheat | cytosol, plasma membrane, vacuole | 46.75 | 51.43 |
| TraesCS2D01G432000.1 | Wheat | cytosol, plasma membrane, vacuole | 45.89 | 50.0 |
| TraesCS4D01G110600.1 | Wheat | cytosol, plasma membrane, vacuole | 42.42 | 44.34 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G384100.1 | EnsemblPlantsGene:TraesCS2D01G384100 | InterPro:Ccc1_fam | PANTHER:PTHR31851 | PANTHER:PTHR31851:SF32 | PFAM:PF01988 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.12.3 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:488471812..488472507
Molecular Weight (calculated)
23400.1 Da
IEP (calculated)
5.854
GRAVY (calculated)
0.471
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHHFGSSHV HADGERRAKE EDVVVVLAVD DEAAEADDHP GDDDGGVNYM ARAQWLRAAV LGANDGLVSV ASLMIGVSAV NDAGKTMLVS GLAGLVAGAC
101: SMAIGEFVSV YAQYDIEVAQ IKRDGAKGKK ESLPSPTLAA LASALAFAVG ALLPLLAGGF VRTYGARVGA VCAATTVGLA GFGAAGGYLG GASVARSGFR
201: VLLGGWVAMA VTYGVLWLFA KVSHIHVSSL A
101: SMAIGEFVSV YAQYDIEVAQ IKRDGAKGKK ESLPSPTLAA LASALAFAVG ALLPLLAGGF VRTYGARVGA VCAATTVGLA GFGAAGGYLG GASVARSGFR
201: VLLGGWVAMA VTYGVLWLFA KVSHIHVSSL A
001: MESHNTLNLD MEKDQEKAFD YSKRAQWLRA AVLGANDGLV STASLMMGVG AVKQNVKIMI LTGFAGLVAG ACSMAIGEFV SVYSQYDIEV AQMKRETGGE
101: IEKEKLPSPT QAAAASALAF SLGAMVPLLA AAFVKEYKVR IGAIVAAVTL ALVMFGWLGA VLGKAPVVKS SLRVLVGGWL AMAITYGFTK LIGSHSHMYV
101: IEKEKLPSPT QAAAASALAF SLGAMVPLLA AAFVKEYKVR IGAIVAAVTL ALVMFGWLGA VLGKAPVVKS SLRVLVGGWL AMAITYGFTK LIGSHSHMYV
Arabidopsis Description
Vacuolar iron transporter homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C3]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.