Subcellular Localization
min:
: max
Winner_takes_all: cytosol, peroxisome, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G438000.1 | Wheat | cytosol | 90.78 | 85.52 |
| TraesCS2A01G419300.1 | Wheat | cytosol | 73.16 | 74.38 |
| HORVU2Hr1G098560.1 | Barley | cytosol, peroxisome | 57.38 | 73.68 |
| TraesCS2D01G424500.1 | Wheat | cytosol | 49.39 | 47.35 |
| TraesCS2D01G424600.1 | Wheat | cytosol | 47.34 | 46.76 |
| TraesCS1D01G391800.1 | Wheat | cytosol, golgi, peroxisome | 40.16 | 38.74 |
| TraesCS1D01G391700.1 | Wheat | cytosol | 37.91 | 35.85 |
| TraesCS7D01G310500.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 21.72 | 34.53 |
| Os11t0278300-00 | Rice | cytosol | 31.35 | 34.15 |
| TraesCS3D01G512000.1 | Wheat | cytosol | 24.8 | 32.44 |
| TraesCS7D01G424700.1 | Wheat | peroxisome | 29.51 | 32.29 |
| TraesCS1D01G017100.1 | Wheat | cytosol | 32.58 | 32.25 |
| TraesCS1D01G017300.1 | Wheat | cytosol | 31.97 | 30.65 |
| TraesCS6D01G400600.1 | Wheat | cytosol | 34.63 | 29.04 |
| TraesCS1D01G015700.1 | Wheat | cytosol, peroxisome, plasma membrane | 25.0 | 28.05 |
| TraesCS1D01G424200.1 | Wheat | plasma membrane | 26.64 | 27.25 |
| TraesCS3D01G503500.1 | Wheat | cytosol | 22.54 | 25.7 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G416300.1 | EnsemblPlantsGene:TraesCS2D01G416300 | InterPro:DUF247_pln | ncoils:Coil | PANTHER:PTHR31549 | PANTHER:PTHR31549:SF32 |
| PFAM:PF03140 | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:529683706..529685486
Molecular Weight (calculated)
53759.0 Da
IEP (calculated)
4.930
GRAVY (calculated)
-0.171
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQVPWEYQL AVADYWKGGP AAMEPAATAW VPGLPLEMTV AAPAASHGDL AVSSSGRQQQ QQLAMVESTT DHHHQYEWSG PVEAFEQAAR EFEDKLGRTE
101: TKIHLFPASM VDLAERYAAP RTVSIGPYHH GRSHAVLQME STKHVASWHF VRASGRSVEE VYSAVCAVAD EARGCYDEER VRGLADDDFK PMMFFDGCFL
201: LQYLLYASTY GGDDEDEGMA VDPALRSAFS SDSDRIFSDV VLLENQLPLP AGPQALDEKP PAWDSSYTPP HLLGLLRYYI VGTGTKLSSE SSRGLSEKAE
301: KVSISVSAVE LAEMGIQLTA TKTGAELKEM GVRKGLLSGE LFLAPLSLDD ANAGFLVNMA ALELCTTPDF SEAGEERSTV CSYLCLLGMV TDRVEDVQEL
401: RTNHILQGGA GLTNEDALRL FISLEKHLRP GRCYLRTMLD IENYRVHRPV RTMVYRFGYK NMKTIITVLT VVGAFVGLLE AIKSLRSK
101: TKIHLFPASM VDLAERYAAP RTVSIGPYHH GRSHAVLQME STKHVASWHF VRASGRSVEE VYSAVCAVAD EARGCYDEER VRGLADDDFK PMMFFDGCFL
201: LQYLLYASTY GGDDEDEGMA VDPALRSAFS SDSDRIFSDV VLLENQLPLP AGPQALDEKP PAWDSSYTPP HLLGLLRYYI VGTGTKLSSE SSRGLSEKAE
301: KVSISVSAVE LAEMGIQLTA TKTGAELKEM GVRKGLLSGE LFLAPLSLDD ANAGFLVNMA ALELCTTPDF SEAGEERSTV CSYLCLLGMV TDRVEDVQEL
401: RTNHILQGGA GLTNEDALRL FISLEKHLRP GRCYLRTMLD IENYRVHRPV RTMVYRFGYK NMKTIITVLT VVGAFVGLLE AIKSLRSK
001: MDPQIVVDIK SLISEDNGLK LLRESAGSEL CCIVRIPQSL ARINLKAYEP KIVSIGPYHH GKEHLKMTQQ HKRRFLKFFV AKMEEKGFVP QELVKAVSSL
101: EGVIRGSYSE DLGLDSENLV QMMVLDGCFI LTLFFVVSGK VEYTNLDDPI FRMPWILPSI RADLLLLENQ VPYVLLQTLF ETSKLVTCSG LNEIAFEFFN
201: YSLQKPETFW EKHYGLEAKH LLDLIRKTFV PVPSQRRIKD HSSKSSFNDH EYLGFVLSAK KLHLRGIKFK PRKNTDSILD ISYSNGVLHI PPVVMDDFTA
301: SIFLNCVAFE QLYADSSNHI TSYVAFMACL INEESDASFL SERRILENYF GTEDEVSRFY KRIGKDIALD LEKSYLAKVF EGVNEYTSQG FHVHCAEFIH
401: THFDSPWTFA SSFAALLLLL FAALQVFFAA YSYFRPPKEK
101: EGVIRGSYSE DLGLDSENLV QMMVLDGCFI LTLFFVVSGK VEYTNLDDPI FRMPWILPSI RADLLLLENQ VPYVLLQTLF ETSKLVTCSG LNEIAFEFFN
201: YSLQKPETFW EKHYGLEAKH LLDLIRKTFV PVPSQRRIKD HSSKSSFNDH EYLGFVLSAK KLHLRGIKFK PRKNTDSILD ISYSNGVLHI PPVVMDDFTA
301: SIFLNCVAFE QLYADSSNHI TSYVAFMACL INEESDASFL SERRILENYF GTEDEVSRFY KRIGKDIALD LEKSYLAKVF EGVNEYTSQG FHVHCAEFIH
401: THFDSPWTFA SSFAALLLLL FAALQVFFAA YSYFRPPKEK
Arabidopsis Description
At5g22540 [Source:UniProtKB/TrEMBL;Acc:Q9FK85]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.