Factsheet for TraesCS4D01G356200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G531200.1	Wheat	plastid	97.8	97.8
TraesCS4B01G363000.1	Wheat	plastid	96.83	96.83
Os03t0106400-01	Rice	plastid	78.29	79.26
KXG40405	Sorghum	mitochondrion	77.56	78.71
VIT_00s0657g00010.t01	Wine grape	mitochondrion, peroxisome	20.24	76.85
HORVU1Hr1G002790.1	Barley	endoplasmic reticulum	47.56	76.77
HORVU4Hr1G087100.5	Barley	mitochondrion	88.78	75.83
TraesCS1D01G211700.1	Wheat	plastid	74.15	74.15
Zm00001d048539_P001	Maize	mitochondrion, plastid	77.56	72.44
Solyc02g091970.2.1	Tomato	plastid	63.9	69.5
GSMUA_Achr8P05090_001	Banana	plastid	68.54	67.87
KRH28316	Soybean	nucleus, plastid	66.34	66.02
KRH77169	Soybean	nucleus, plastid	65.37	66.01
GSMUA_Achr3P15180_001	Banana	plastid	65.61	64.35
PGSC0003DMT400055202	Potato	plastid	64.39	63.31
Bra017964.1-P	Field mustard	plastid	62.44	62.44
CDX83089	Canola	plastid	62.93	62.32
AT3G49680.1	Thale cress	plastid	62.68	62.23
Bra029966.1-P	Field mustard	plastid	62.68	62.08
CDY68801	Canola	plastid	61.71	61.56
Solyc03g043880.2.1	Tomato	plastid	62.68	61.48
PGSC0003DMT400044068	Potato	plastid	62.68	61.34
TraesCS2D01G405200.1	Wheat	plastid	60.73	60.73
CDY08161	Canola	endoplasmic reticulum	60.49	60.49
TraesCS4D01G236800.1	Wheat	mitochondrion	56.34	57.89
CDY54321	Canola	mitochondrion	62.93	52.44

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS
InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824	GO:GO:0004084
GO:GO:0008150	GO:GO:0008152	GO:GO:0009081	GO:GO:0009987	GO:GO:0016740	PFAM:PF01063
PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF3	SUPFAM:SSF56752	TIGRFAMs:TIGR01123
EnsemblPlantsGene:TraesCS4D01G356200	EnsemblPlants:TraesCS4D01G356200.1	TIGR:cd01557	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:+:505325926..505329894

Molecular Weight (calculated)

44144.0 Da

IEP (calculated)

6.626

GRAVY (calculated)

-0.098

Length

410 amino acids

Sequence
(BLAST)

001: MELGLASSRG PAGPSLAVAG RRPRSSLSPP LPCPLSLQIQ TRGYSMPTLH HKAHTTVGCQ ASVATKYMET DDIVDLDWEN LGFGLVDTDF MYMAKCGPDG
101: NFSNGEILPF GPIALSPSAG VLNYGQGLFE GLKAYRKTDG SVLLFRPEEN AIRMKNGSDR MCMPAPSVEQ FVDAVKQTVL ANKRWVPPTG KGSLYIRPLL
201: IGSGAILGLA PAPEYTFLIY VSPVGNYFKE GLAPINLIIE DNFHRAAPGG TGGVKTIGNY ASVLKAQRTA KEKGYSDVLY LDAVHNKYLE EVSSCNIFVV
301: KGNAISTPAI EGTILPGITR KSIIEVAESK GYKVEERHVS VDELLDADEV FCTGTAVVVS PVGSITYKGK RVEYDGNQGV GVVSQQLYTS LTSLQMGHTE
401: DRMGWTVQLN

Best Arabidopsis Sequence Match ( AT5G65780.1 )
(BLAST)

001: MERSAVASGF HRNYILCASR AATSTTRLHS LSSLRNFPSS SLRIRHCPSP ISSNFIVSEV SRNRRCDAVS SSTTDVTELA EIDWDKIDFG LKPTDYMYAM
101: KCSRDGEFSQ GQLQPFGNID INPAAGVLNY GQGLFEGLKA YRKQDGNILL FRPEENAIRM RNGAERMCMP SPTVEQFVEA VKTTVLANKR WIPPPGKGSL
201: YIRPLLMGTG AVLGLAPAPE YTFLIFVSPV GNYFKEGVAP INLIVETEFH RATPGGTGGV KTIGNYAAVL KAQSIAKAKG YSDVLYLDCL HKRYLEEVSS
301: CNIFIVKDNV ISTPEIKGTI LPGITRKSII EVARSQGFKV EERNVTVDEL VEADEVFCTG TAVVLSPVGS ITYKSQRFSY GEDGFGTVSK QLYTSLTSLQ
401: MGLSEDNMNW TVQLS

Arabidopsis Description

ATBCAT-5Branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) [Source:UniProtKB/TrEMBL;Acc:F4JXK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.