CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28316	Soybean	nucleus, plastid	94.58	93.2
VIT_00s0657g00010.t01	Wine grape	mitochondrion, peroxisome	22.66	85.19
Os10t0549500-00	Rice	cytosol	54.68	81.02
Solyc02g091970.2.1	Tomato	plastid	70.69	76.13
Bra017964.1-P	Field mustard	plastid	73.65	72.93
Zm00001d045803_P001	Maize	cytosol, peroxisome, plastid	15.02	72.62
AT3G49680.1	Thale cress	plastid	73.15	71.91
CDY68801	Canola	plastid	72.66	71.78
CDX83089	Canola	plastid	72.66	71.26
Bra029966.1-P	Field mustard	plastid	72.17	70.77
PGSC0003DMT400055202	Potato	plastid	72.17	70.26
Os03t0106400-01	Rice	plastid	68.47	68.64
GSMUA_Achr8P05090_001	Banana	plastid	69.95	68.6
Os05t0558400-01	Rice	plastid	68.97	68.46
PGSC0003DMT400044068	Potato	plastid	69.95	67.78
Solyc03g043880.2.1	Tomato	plastid	69.7	67.7
TraesCS1A01G208500.1	Wheat	plastid	68.23	67.56
HORVU1Hr1G053320.7	Barley	plastid	68.23	67.4
TraesCS1B01G222500.1	Wheat	plastid	67.73	67.07
Zm00001d029848_P002	Maize	endoplasmic reticulum, plasma membrane	68.47	66.67
TraesCS1D01G211700.1	Wheat	plastid	67.24	66.59
CDY08161	Canola	endoplasmic reticulum	67.24	66.59
KXG40405	Sorghum	mitochondrion	65.76	66.09
TraesCS4D01G356200.1	Wheat	plastid	66.01	65.37
TraesCS4B01G363000.1	Wheat	plastid	66.01	65.37
TraesCS5A01G531200.1	Wheat	plastid	65.76	65.12
GSMUA_Achr3P15180_001	Banana	plastid	65.76	63.88
HORVU1Hr1G002790.1	Barley	endoplasmic reticulum	38.18	61.02
Zm00001d048539_P001	Maize	mitochondrion, plastid	65.27	60.36
CDY54321	Canola	mitochondrion	71.92	59.35
KXG38964	Sorghum	plastid	64.53	59.14
KRH61467	Soybean	mitochondrion	55.91	59.11
Zm00001d002694_P004	Maize	endoplasmic reticulum	54.68	58.42
KRH42010	Soybean	cytosol	50.74	57.87
TraesCS2A01G407900.1	Wheat	plastid	57.88	57.32
TraesCS2B01G426100.1	Wheat	plastid	57.64	57.07
KRH49895	Soybean	cytosol	50.25	56.82
KRH42003	Soybean	cytosol	46.8	56.72
KRH49893	Soybean	cytosol	50.0	56.7
TraesCS2D01G405200.1	Wheat	plastid	56.9	56.34
HORVU4Hr1G087100.5	Barley	mitochondrion	66.5	56.25
Os04t0559400-01	Rice	plastid	55.42	54.88
KRH42008	Soybean	cytosol	49.51	54.32
KRH52160	Soybean	endoplasmic reticulum, plasma membrane, plastid	56.4	49.57
HORVU2Hr1G096380.2	Barley	plastid	57.88	48.65
KXG26892	Sorghum	cytosol, mitochondrion, plastid	56.16	41.23

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	EntrezGene:100783594
Gene3D:3.20.10.10	Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	EMBL:ACUP02000659
InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS	InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	EnsemblPlantsGene:GLYMA_01G196300
GO:GO:0003674	GO:GO:0003824	GO:GO:0004084	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483
GO:GO:0008652	GO:GO:0009058	GO:GO:0009081	GO:GO:0009082	GO:GO:0009987	GO:GO:0016740
GO:GO:0052654	GO:GO:0052655	GO:GO:0052656	UniProt:I1J9H2	EnsemblPlants:KRH77169	ProteinID:KRH77169
ProteinID:KRH77169.1	PFAM:PF01063	PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF3
MetaCyc:PWY-5057	MetaCyc:PWY-5076	MetaCyc:PWY-5078	MetaCyc:PWY-5101	MetaCyc:PWY-5103	MetaCyc:PWY-5104
MetaCyc:PWY-5108	MetaCyc:PWY-7767	SUPFAM:SSF56752	TIGRFAMs:TIGR01123	UniParc:UPI00023371E0	:

Description

hypothetical protein

Coordinates

chr1:-:53061779..53067527

Molecular Weight (calculated)

44585.9 Da

IEP (calculated)

5.822

GRAVY (calculated)

-0.036

Length

406 amino acids

Sequence
(BLAST)

001: MESIRLIYPI CPSRHSSFLL SHQSPFLCEP SLSLKLRKQF PLTSQNVLEA ASPLRPSATL SSDPYSETIE LADIEWDNLG FGLQPTDYMY IMKCTRGGTF
101: SKGELQRFGN IELNPSAGVL NYGQGLFEGL KAYRKQDGSI LLFRPEENGL RMQIGAERMC MPSPTMEQFV EAVKDTVLAN KRWVPPAGKG SLYIRPLLMG
201: SGPVLGVAPA PEYTFLIYVS PVGNYFKEGL APINLIVENE FHRATPGGTG GVKTIGNYAA VLKAQSEAKA KGYSDVLYLD CVHKRYLEEV SSCNIFVVKG
301: NIISTPAIKG TILPGITRKS IIDVARSEGF QVEERLVSVD ELLDADEVFC TGTAVVVSPV GSITYLGKRV TYGDGIGVVA QQLYTVLTRL QMGLTEDEMN
401: WTVELR

Best Arabidopsis Sequence Match ( AT3G49680.1 )
(BLAST)

001: MERAAILPSV NQNYLLCPSR AFSTRLHSST RNLSPPSFAS IKLQHSSSSV SSNGGISLTR CNAVSSNSSS TLVTELADID WDTVGFGLKP ADYMYVMKCN
101: IDGEFSKGEL QRFGNIEISP SAGVLNYGQG LFEGLKAYRK KDGNNILLFR PEENAKRMRN GAERMCMPAP TVEQFVEAVT ETVLANKRWV PPPGKGSLYV
201: RPLLMGTGAV LGLAPAPEYT FIIYVSPVGN YFKEGVAPIN LIVENEFHRA TPGGTGGVKT IGNYAAVLKA QSIAKAKGYS DVLYLDCIYK RYLEEVSSCN
301: IFIVKDNVIS TPEIKGTILP GITRKSMIDV ARTQGFQVEE RNVTVDELLE ADEVFCTGTA VVVSPVGSVT YKGKRVSYGE GTFGTVSKQL YTVLTSLQMG
401: LIEDNMKWTV NLS

Arabidopsis Description

BCAT3Branched-chain-amino-acid aminotransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M401]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.