CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002694_P004	Maize	endoplasmic reticulum	58.23	84.74
TraesCS2B01G426100.1	Wheat	plastid	55.33	74.63
TraesCS2A01G407900.1	Wheat	plastid	55.15	74.39
TraesCS2D01G405200.1	Wheat	plastid	54.79	73.9
Os04t0559400-01	Rice	plastid	53.16	71.71
HORVU2Hr1G096380.2	Barley	plastid	56.06	64.18
VIT_00s0657g00010.t01	Wine grape	mitochondrion, peroxisome	12.3	62.96
KXG40405	Sorghum	mitochondrion	43.04	58.91
Solyc02g091970.2.1	Tomato	plastid	39.42	57.82
GSMUA_Achr8P05090_001	Banana	plastid	42.68	57.0
KRH77169	Soybean	nucleus, plastid	41.23	56.16
KRH28316	Soybean	nucleus, plastid	41.41	55.58
AT3G49680.1	Thale cress	plastid	40.69	54.48
CDX83089	Canola	plastid	40.69	54.35
GSMUA_Achr3P15180_001	Banana	plastid	41.05	54.31
Bra029966.1-P	Field mustard	plastid	40.33	53.86
PGSC0003DMT400055202	Potato	plastid	40.51	53.72
CDY68801	Canola	plastid	39.6	53.28
Bra017964.1-P	Field mustard	plastid	39.42	53.17
PGSC0003DMT400044068	Potato	plastid	39.78	52.51
Solyc03g043880.2.1	Tomato	plastid	39.06	51.67
CDY08161	Canola	endoplasmic reticulum	37.79	50.98
KXG38964	Sorghum	plastid	39.6	49.44
OQU92960	Sorghum	mitochondrion	36.71	48.68
CDY54321	Canola	mitochondrion	42.13	47.36

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	UniProt:A0A1B6PMJ9	InterPro:Aminotrans_IV
InterPro:Aminotrans_IV_CS	InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824
GO:GO:0004084	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058
GO:GO:0009081	GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655
GO:GO:0052656	EnsemblPlants:KXG26892	ProteinID:KXG26892	ProteinID:KXG26892.1	PFAM:PF01063	ScanProsite:PS00770
PANTHER:PTHR42825	PANTHER:PTHR42825:SF1	MetaCyc:PWY-5057	MetaCyc:PWY-5076	MetaCyc:PWY-5078	MetaCyc:PWY-5101
MetaCyc:PWY-5103	MetaCyc:PWY-5104	MetaCyc:PWY-5108	MetaCyc:PWY-7767	EnsemblPlantsGene:SORBI_3006G176600	SUPFAM:SSF56752
TIGRFAMs:TIGR01123	UniParc:UPI00081ABA80	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:53182532..53187346

Molecular Weight (calculated)

60136.2 Da

IEP (calculated)

9.984

GRAVY (calculated)

-0.205

Length

553 amino acids

Sequence
(BLAST)

001: MDQLLVRAVA HKTVPFSQHK GGGFPCSRSS YNLQIVPTLT DMVDPDAPCP TRHALDASVN PASAPSRRRR LRPGKFGNRN RRPITNGNAP AARRRRTIRA
101: IARSQPPSSR RGHASLLPRP FIPTEPASEL QTYLPPVAGH GSPPRLQMEL RTCAAPSSAS LSSGRGAVPS SRLLSRQIWS RSAYCTVSST SSSPVARRSR
201: FSTLMATAYN TGTPDLADFN WDALGFQLIP TDFMYLMSCS SEGVFTNGKL VPYGPIELNP AAAVLNYGQG LLEGLRAHRK EDGSILLFRP HENALRMKTG
301: ADRLCMPAPS VEQFLEAVKL TVLANKHWVP PFGKGSLYIR PQLIGSGAIL GVAPAPQYTF IVFVCPVGHY FKDGLSPISL LTEEEYHRAA PGGTGDIKTI
401: GNYASVVSAQ RRAKEKGHSD VLYLDPIHNK FVEEVSSCNI FMVKDNVIST PLLTGTILPG ITRRSVIEIS QNLGFQVEER PITIDELLGA DEVFCTGTAV
501: VVSPVGSITY RGRRVEYGKN QEAGAVSQQL YAAFTAIQKG VTEDRMGWTL QLA

Best Arabidopsis Sequence Match ( AT1G10070.1 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.