Factsheet for Solyc03g043880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044068	Potato	plastid	90.67	90.45
VIT_00s0657g00010.t01	Wine grape	mitochondrion, peroxisome	21.53	83.33
Solyc02g091970.2.1	Tomato	plastid	72.73	80.64
Os10t0549500-00	Rice	cytosol	49.76	75.91
Zm00001d045803_P001	Maize	cytosol, peroxisome, plastid	14.59	72.62
KRH77169	Soybean	nucleus, plastid	67.7	69.7
Bra017964.1-P	Field mustard	plastid	68.18	69.51
KRH28316	Soybean	nucleus, plastid	67.94	68.93
CDY68801	Canola	plastid	67.46	68.61
AT3G49680.1	Thale cress	plastid	67.46	68.28
CDX83089	Canola	plastid	66.99	67.63
Bra029966.1-P	Field mustard	plastid	66.75	67.39
GSMUA_Achr8P05090_001	Banana	plastid	63.16	63.77
Os03t0106400-01	Rice	plastid	61.72	63.7
HORVU1Hr1G053320.7	Barley	plastid	62.2	63.26
Os05t0558400-01	Rice	plastid	61.72	63.08
TraesCS4D01G356200.1	Wheat	plastid	61.48	62.68
TraesCS1D01G211700.1	Wheat	plastid	61.48	62.68
TraesCS1B01G222500.1	Wheat	plastid	61.48	62.68
TraesCS1A01G208500.1	Wheat	plastid	61.48	62.68
Zm00001d029848_P002	Maize	endoplasmic reticulum, plasma membrane	62.44	62.59
CDY08161	Canola	endoplasmic reticulum	61.24	62.44
TraesCS5A01G531200.1	Wheat	plastid	61.0	62.2
TraesCS4B01G363000.1	Wheat	plastid	61.0	62.2
KXG40405	Sorghum	mitochondrion	59.57	61.63
GSMUA_Achr3P15180_001	Banana	plastid	59.57	59.57
CDY54321	Canola	mitochondrion	66.51	56.5
Solyc04g077240.2.1	Tomato	mitochondrion	36.84	56.2
Zm00001d048539_P001	Maize	mitochondrion, plastid	58.85	56.04
HORVU1Hr1G002790.1	Barley	endoplasmic reticulum	33.97	55.91
Zm00001d002694_P004	Maize	endoplasmic reticulum	50.24	55.26
KXG38964	Sorghum	plastid	57.89	54.63
Solyc07g021630.2.1	Tomato	plastid	50.0	54.57
TraesCS2B01G426100.1	Wheat	plastid	53.35	54.39
TraesCS2A01G407900.1	Wheat	plastid	53.11	54.15
TraesCS2D01G405200.1	Wheat	plastid	53.11	54.15
HORVU4Hr1G087100.5	Barley	mitochondrion	61.48	53.54
Solyc12g088220.1.1	Tomato	plastid	48.33	53.16
Os04t0559400-01	Rice	plastid	50.72	51.71
HORVU2Hr1G096380.2	Barley	plastid	53.11	45.96
KXG26892	Sorghum	cytosol, mitochondrion, plastid	51.67	39.06

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS
InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824	GO:GO:0004084
GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058	GO:GO:0009081
GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655	GO:GO:0052656
UniProt:K4BG08	PFAM:PF01063	PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF3
SUPFAM:SSF56752	EnsemblPlantsGene:Solyc03g043880.2	EnsemblPlants:Solyc03g043880.2.1	TIGRFAMs:TIGR01123	UniParc:UPI0002767F9F	SEG:seg

Description

Branched-chain-amino-acid aminotransferase [Source:UniProtKB/TrEMBL;Acc:K4BG08]

Coordinates

chr3:-:7542329..7548881

Molecular Weight (calculated)

45164.3 Da

IEP (calculated)

7.797

GRAVY (calculated)

-0.059

Length

418 amino acids

Sequence
(BLAST)

001: MESGGVLAGL HRNPTCHHLL RPPRAAVNNL LSSSSFTDKR HFSPLPLKFQ KQSHFASYSC NCSINDGSAF QVASSASATA ELANIDWDNI GFAVMPTDYM
101: YSMKCSQDGN FSKGELQRFG NIELSPASGI LNYGQGLFEG LKAYKRHDGN ILLFRPEENA LRMKMGAERI CMPSPSVEQF VEAVKATVLA NERWIPPPGK
201: GSLYIRPLLM GSGAILGVAP APEYTFLIYV SPVGNYFKEG MAPINLLIET EMHRATPGGT GGVKTIGNYA AVLKAQSAAK AKGYSDVLYL DSVNNRYLEE
301: VSSCNVFIVK GNLIATPAIK GTILPGITRK SIIDVALSQG FQVEERQVSV DELLDADEVF CTGTAVVVSP VGSITHLGKR VSYGSDGVGR VSKQLYSTLT
401: SLQMGLATDN MNWTVELK

Best Arabidopsis Sequence Match ( AT5G65780.1 )
(BLAST)

001: MERSAVASGF HRNYILCASR AATSTTRLHS LSSLRNFPSS SLRIRHCPSP ISSNFIVSEV SRNRRCDAVS SSTTDVTELA EIDWDKIDFG LKPTDYMYAM
101: KCSRDGEFSQ GQLQPFGNID INPAAGVLNY GQGLFEGLKA YRKQDGNILL FRPEENAIRM RNGAERMCMP SPTVEQFVEA VKTTVLANKR WIPPPGKGSL
201: YIRPLLMGTG AVLGLAPAPE YTFLIFVSPV GNYFKEGVAP INLIVETEFH RATPGGTGGV KTIGNYAAVL KAQSIAKAKG YSDVLYLDCL HKRYLEEVSS
301: CNIFIVKDNV ISTPEIKGTI LPGITRKSII EVARSQGFKV EERNVTVDEL VEADEVFCTG TAVVLSPVGS ITYKSQRFSY GEDGFGTVSK QLYTSLTSLQ
401: MGLSEDNMNW TVQLS

Arabidopsis Description

ATBCAT-5Branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) [Source:UniProtKB/TrEMBL;Acc:F4JXK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.