Factsheet for Solyc04g077240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc03g122030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	Solyc03g122030.1.1	AT1G54060.1	21798944
AT1G10070.1	Solyc02g086840.2.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012709	Potato	mitochondrion	84.31	61.11
Solyc07g021630.2.1	Tomato	plastid	70.07	50.13
Solyc12g088220.1.1	Tomato	plastid	65.69	47.37
VIT_18s0001g08450.t01	Wine grape	mitochondrion	63.14	44.7
VIT_18s0001g08430.t01	Wine grape	mitochondrion	62.41	44.19
Bra031699.1-P	Field mustard	mitochondrion	58.76	42.37
Bra019963.1-P	Field mustard	cytosol	59.49	42.34
Bra018463.1-P	Field mustard	mitochondrion	57.66	41.91
CDY31050	Canola	mitochondrion	57.66	41.91
Solyc02g091970.2.1	Tomato	plastid	57.3	41.64
AT1G10070.1	Thale cress	mitochondrion	58.76	41.49
CDY20661	Canola	mitochondrion	56.93	41.38
GSMUA_Achr3P15170_001	Banana	mitochondrion	56.93	40.84
GSMUA_Achr8P26500_001	Banana	mitochondrion	56.93	40.84
TraesCS4D01G236800.1	Wheat	mitochondrion	56.93	39.1
TraesCS4B01G235400.3	Wheat	mitochondrion	56.57	38.85
TraesCS4A01G059800.1	Wheat	mitochondrion	55.47	38.1
Os03t0231600-01	Rice	mitochondrion	56.93	37.59
OQU92960	Sorghum	mitochondrion	56.93	37.41
Solyc03g043880.2.1	Tomato	plastid	56.2	36.84
CDY57926	Canola	cytosol	59.49	35.9
CDY63740	Canola	cytosol	59.12	35.76
Zm00001d028303_P003	Maize	mitochondrion, plastid	54.74	35.71
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	56.2	34.76

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotransferase-like	InterPro:B_amino_transII
GO:GO:0003674	GO:GO:0003824	GO:GO:0004084	GO:GO:0008150	GO:GO:0008152	GO:GO:0009081
GO:GO:0009987	GO:GO:0016740	UniProt:K4BUG1	PIRSF:PIRSF006468	PANTHER:PTHR42825	PANTHER:PTHR42825:SF5
SUPFAM:SSF56752	EnsemblPlantsGene:Solyc04g077240.2	EnsemblPlants:Solyc04g077240.2.1	UniParc:UPI0002766263	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:62188479..62191099

Molecular Weight (calculated)

30446.4 Da

IEP (calculated)

6.544

GRAVY (calculated)

-0.175

Length

274 amino acids

Sequence
(BLAST)

001: MIRGAACFRK LFQSSAVSSK VAARCYTAQA AVQPAIYSSD EESADIDWDN LGFQLIQTDY MYMTKCSDDG IFRKGQLNRY GNINLSPSAG VLNYGQGLFE
101: GTKAYRRDDG RVFLFRPEQN AIRMQIGAER MCMPSPTTDQ FVDAVKQTAL ANKRWIPPSG KGSLYIRPLL IGTGPILGLA PAPEYTFLVY ACPVGNYFKV
201: EERLIEADEL ISADEVFCTG TAVGVAPVGS ITYKGQRIDY KISSDLSCKQ FYSRLVGIQR GVIKDERDWI VEIE

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.