CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDY02487
CDY08216
CDY26148
CDY33093
CDY51405
CDY58518
CDY61477

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	CDY02487	AT1G54060.1	21798944
AT1G10070.1	CDY08216	AT1G54060.1	21798944
AT1G10070.1	CDY26148	AT1G54060.1	21798944
AT1G10070.1	CDY33093	AT1G54060.1	21798944
AT1G10070.1	CDY51405	AT1G54060.1	21798944
AT1G10070.1	CDY61477	AT1G54060.1	21798944
AT1G10070.1	CDX86457	AT3G27960.1	21798944
AT1G10070.1	CDY58518	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31050	Canola	mitochondrion	97.35	97.35
AT1G10070.1	Thale cress	mitochondrion	90.72	88.14
CDY57926	Canola	cytosol	86.47	71.81
CDY63740	Canola	cytosol	85.94	71.52
VIT_18s0001g08430.t01	Wine grape	mitochondrion	66.31	64.6
VIT_18s0001g08450.t01	Wine grape	mitochondrion	65.25	63.57
PGSC0003DMT400030117	Potato	cytosol, nucleus, peroxisome	28.12	62.72
CDY31051	Canola	mitochondrion	47.75	61.86
PGSC0003DMT400012703	Potato	mitochondrion	60.21	61.85
Solyc07g021630.2.1	Tomato	plastid	61.8	60.84
PGSC0003DMT400012709	Potato	mitochondrion	60.21	60.05
CDY69091	Canola	mitochondrion, peroxisome, plastid	27.59	57.14
GSMUA_Achr3P15170_001	Banana	mitochondrion	57.82	57.07
Solyc04g077240.2.1	Tomato	mitochondrion	41.38	56.93
CDY45047	Canola	peroxisome	25.2	56.89
CDY12427	Canola	cytosol	25.2	56.55
CDY03587	Canola	cytosol	25.2	56.55
CDY20662	Canola	mitochondrion	51.72	56.52
CDY71328	Canola	cytosol, peroxisome, plastid	23.08	56.49
CDY63741	Canola	mitochondrion	51.19	55.14
GSMUA_Achr8P26500_001	Banana	mitochondrion	55.7	54.97
CDY28146	Canola	cytosol	51.99	54.6
CDY57927	Canola	mitochondrion	56.5	54.34
CDY45046	Canola	mitochondrion	33.95	54.24
Solyc12g088220.1.1	Tomato	plastid	54.64	54.21
TraesCS4D01G236800.1	Wheat	mitochondrion	56.23	53.13
TraesCS4B01G235400.3	Wheat	mitochondrion	56.23	53.13
CDY03585	Canola	cytosol	50.13	52.65
CDY68801	Canola	plastid	57.29	52.55
Os03t0231600-01	Rice	mitochondrion	57.82	52.53
CDY03586	Canola	plastid	50.13	52.5
TraesCS4A01G059800.1	Wheat	mitochondrion	55.17	52.13
CDY16426	Canola	cytosol	40.58	51.52
OQU92960	Sorghum	mitochondrion	56.76	51.32
CDX83089	Canola	plastid	56.23	51.21
Zm00001d028303_P003	Maize	mitochondrion, plastid	56.5	50.71
CDY22953	Canola	cytosol, peroxisome, plastid	13.53	50.49
CDY27928	Canola	cytosol	14.59	50.46
CDY22959	Canola	cytosol	41.64	50.0
CDY24619	Canola	cytosol	47.21	49.44
CDY51693	Canola	cytosol	46.95	49.17
CDY08161	Canola	endoplasmic reticulum	53.32	49.02
CDX82281	Canola	cytosol	46.15	48.33
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	56.76	48.31
PGSC0003DMT400030118	Potato	mitochondrion	50.13	47.01
CDY54321	Canola	mitochondrion	55.97	42.89
CDX99513	Canola	mitochondrion	6.1	37.7
CDY66609	Canola	cytosol	45.36	35.4

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	GO:A0A078G5D0	UniProt:A0A078G5D0
InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS	InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	EnsemblPlants:CDY20661
ProteinID:CDY20661	ProteinID:CDY20661.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004084	GO:GO:0008150
GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058	GO:GO:0009081	GO:GO:0009082
GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655	GO:GO:0052656	EnsemblPlantsGene:GSBRNA2T00012846001
PFAM:PF01063	PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF5	MetaCyc:PWY-5057
MetaCyc:PWY-5076	MetaCyc:PWY-5078	MetaCyc:PWY-5101	MetaCyc:PWY-5103	MetaCyc:PWY-5104	MetaCyc:PWY-5108
SUPFAM:SSF56752	TIGRFAMs:TIGR01123	UniParc:UPI0004EE0CF9	:	:	:

Description

BnaC08g13970DBranched-chain-amino-acid aminotransferase [Source:UniProtKB/TrEMBL;Acc:A0A078G5D0]

Coordinates

chrLK032110:-:503964..506082

Molecular Weight (calculated)

41347.4 Da

IEP (calculated)

7.395

GRAVY (calculated)

-0.202

Length

377 amino acids

Sequence
(BLAST)

001: MFKAISSLRK SLVLPLHSNI RTLQTFSKYN AQAASALREK PLYQDDEYAD VDWDNLGFGL TPADYMYVMK CSKDGEFTQG ELSRFGNIQL SPSAGAIYEG
101: TKAYRKENGK LHLFRPDHNA VRMQLGAERM LMPSPSVDQF VDAVKQTAFA NKRWVPPSGK GSLYIRPLLM GSGPVLGLGP SREYTFIVYA SPVGNYFKEG
201: IAALNLYVEE EYVRAAPGGA GGVKSITNYA PVLKALSRAK SRGFSDVLYL DSVKKKYLEE ASSCNVFVIK GRTISTPATN GTILEGITRK SVMEIASDQG
301: YEVVEKAVHV DEVMDADEVF CTGTAVGVAP VGTITYQDKR VEYETGDESV CQKLRSVLVG IQTGLIEDTK GWVTCIN

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.