Factsheet for Zm00001d028303_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003549_P001
Zm00001d010753_P001
Zm00001d016876_P001
Zm00001d017793_P001
Zm00001d025514_P001
Zm00001d042917_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	Zm00001d003549_P001	AT1G54060.1	21798944
AT1G10070.1	Zm00001d010753_P001	AT1G54060.1	21798944
AT1G10070.1	Zm00001d016876_P001	AT1G54060.1	21798944
AT1G10070.1	Zm00001d025514_P001	AT1G54060.1	21798944
AT1G10070.1	Zm00001d042917_P001	AT1G54060.1	21798944
AT1G10070.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT1G10070.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92960	Sorghum	mitochondrion	82.38	82.97
Os03t0231600-01	Rice	mitochondrion	75.24	76.14
TraesCS4A01G059800.1	Wheat	mitochondrion	72.14	75.94
TraesCS4D01G236800.1	Wheat	mitochondrion	70.0	73.68
TraesCS4B01G235400.3	Wheat	mitochondrion	69.05	72.68
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	72.86	69.07
Zm00001d045803_P001	Maize	cytosol, peroxisome, plastid	13.33	66.67
GSMUA_Achr8P26500_001	Banana	mitochondrion	60.0	65.97
GSMUA_Achr3P15170_001	Banana	mitochondrion	60.0	65.97
PGSC0003DMT400012703	Potato	mitochondrion	52.14	59.67
CDY12427	Canola	cytosol	23.57	58.93
CDY03587	Canola	cytosol	23.57	58.93
KRH61467	Soybean	mitochondrion	53.57	58.59
CDY45047	Canola	peroxisome	23.1	58.08
Solyc07g021630.2.1	Tomato	plastid	52.62	57.7
AT1G10070.1	Thale cress	mitochondrion	52.86	57.22
CDY71328	Canola	cytosol, peroxisome, plastid	20.95	57.14
CDY31050	Canola	mitochondrion	51.19	57.03
PGSC0003DMT400012709	Potato	mitochondrion	51.19	56.88
PGSC0003DMT400030117	Potato	cytosol, nucleus, peroxisome	22.86	56.8
Bra018463.1-P	Field mustard	mitochondrion	50.95	56.76
KRH42010	Soybean	cytosol	48.1	56.74
CDY20661	Canola	mitochondrion	50.71	56.5
KRH42003	Soybean	cytosol	45.0	56.42
CDY45046	Canola	mitochondrion	31.67	56.36
Bra018831.1-P	Field mustard	cytosol	48.1	56.27
Bra019963.1-P	Field mustard	cytosol	51.43	56.1
CDY28146	Canola	cytosol	47.86	55.99
Zm00001d029848_P002	Maize	endoplasmic reticulum, plasma membrane	55.48	55.88
CDY69091	Canola	mitochondrion, peroxisome, plastid	24.05	55.49
AT1G50110.1	Thale cress	cytosol	46.9	55.34
KRH49893	Soybean	cytosol	46.9	55.03
Bra031699.1-P	Field mustard	mitochondrion	49.76	55.0
KRH49895	Soybean	cytosol	46.9	54.87
CDY03585	Canola	cytosol	46.9	54.87
Solyc04g077240.2.1	Tomato	mitochondrion	35.71	54.74
CDY27928	Canola	cytosol	14.05	54.13
CDY31051	Canola	mitochondrion	37.38	53.95
AT1G50090.1	Thale cress	cytosol	47.14	53.95
CDY16426	Canola	cytosol	37.38	52.86
Bra039744.1-P	Field mustard	cytosol	35.71	52.82
CDY03586	Canola	plastid	45.24	52.78
Solyc12g088220.1.1	Tomato	plastid	47.62	52.63
Bra014235.1-P	Field mustard	plastid	45.0	52.5
CDY22953	Canola	cytosol, peroxisome, plastid	12.62	52.48
KRH42008	Soybean	cytosol	46.19	52.43
Bra019964.1-P	Field mustard	cytosol	45.95	52.3
CDY51693	Canola	cytosol	44.52	51.94
CDY22959	Canola	cytosol	38.81	51.91
Bra022448.1-P	Field mustard	cytosol	44.29	51.67
Zm00001d002694_P004	Maize	endoplasmic reticulum	46.67	51.58
Zm00001d048539_P001	Maize	mitochondrion, plastid	53.81	51.48
CDY24619	Canola	cytosol	43.81	51.11
Bra001761.1-P	Field mustard	cytosol	43.81	51.11
CDX82281	Canola	cytosol	43.57	50.83
CDY20662	Canola	mitochondrion	40.24	48.99
CDY57927	Canola	mitochondrion	45.71	48.98
KRH52160	Soybean	endoplasmic reticulum, plasma membrane, plastid	53.81	48.92
Bra018464.1-P	Field mustard	mitochondrion	40.0	48.7
PGSC0003DMT400030118	Potato	mitochondrion	45.71	47.76
AT3G19710.1	Thale cress	cytosol	40.24	47.74
CDY63740	Canola	cytosol	51.43	47.68
CDY57926	Canola	cytosol	51.43	47.58
CDY63741	Canola	mitochondrion	39.29	47.14
CDX99513	Canola	mitochondrion	6.19	42.62
AT1G10060.5	Thale cress	cytosol	46.19	40.42
CDY66609	Canola	cytosol	41.67	36.23
VIT_00s0558g00010.t01	Wine grape	plastid	8.57	26.28

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	EntrezGene:100281255
Gene3D:3.20.10.10	Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	UniProt:A0A1D6JUA3
InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS	InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674
GO:GO:0003824	GO:GO:0004084	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652
GO:GO:0009058	GO:GO:0009081	GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654
GO:GO:0052655	GO:GO:0052656	ProteinID:ONL95398.1	PFAM:PF01063	PIRSF:PIRSF006468	ScanProsite:PS00770
PANTHER:PTHR42825	PANTHER:PTHR42825:SF6	SUPFAM:SSF56752	TIGRFAMs:TIGR01123	UniParc:UPI0004DE8324	EnsemblPlantsGene:Zm00001d028303
EnsemblPlants:Zm00001d028303_P003	EnsemblPlants:Zm00001d028303_T003	SEG:seg	:	:	:

Description

Branched-chain-amino-acid aminotransferase

Coordinates

chr1:-:29785414..29788045

Molecular Weight (calculated)

45650.6 Da

IEP (calculated)

7.820

GRAVY (calculated)

-0.203

Length

420 amino acids

Sequence
(BLAST)

001: MAALTSAKGA LLPSWARSSS SGHGGDLWRV LGKALATAGG GGGGGCSLLL PRRWQSSLPQ LDHVADSMRV NVLRRSNEES GGEIDWDNLG FGLTPTDYMY
101: VTRCSPEDRG DFPRGELCRY GNIELSPSSG VLNYAQGLFE GMKAYRRPDR AGYTLFRPEE NARRMQRGAE RMCMPAPSVE QFVHAVRQTV LANRRWVPPQ
201: GKGALYLRPL LVGSGPILGL APAPEYTFLI YAAPVGNYFK EGLAPINLVV HDEFHRAMPG GTGGVKTIAN YAPVLRAQMD AKSKGFTDVL YLDSVHKRYL
301: EEVSSCNVFV VKGGVVATPD TRGTILPGIT RKSVIELARD RGYKVEERLV SIDDLVAADE VFCTGTAVVV APVSTVTYQG ERYEFRTGPD TVSQELYTTL
401: TSIQMGMAAE DSKGWTVAVE

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.