CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES12241
KXG30464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	EES12241	AT1G54060.1	21798944
AT1G10070.1	KXG30464	AT1G54060.1	21798944
AT1G10070.1	EES05647	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028303_P003	Maize	mitochondrion, plastid	82.97	82.38
TraesCS4A01G059800.1	Wheat	mitochondrion	72.9	76.19
Os03t0231600-01	Rice	mitochondrion	73.62	73.98
TraesCS4D01G236800.1	Wheat	mitochondrion	69.3	72.43
TraesCS4B01G235400.3	Wheat	mitochondrion	68.11	71.18
GSMUA_Achr8P26500_001	Banana	mitochondrion	61.63	67.28
GSMUA_Achr3P15170_001	Banana	mitochondrion	61.15	66.75
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	70.26	66.14
PGSC0003DMT400012703	Potato	mitochondrion	53.24	60.49
KRH61467	Soybean	mitochondrion	54.68	59.38
CDY12427	Canola	cytosol	23.74	58.93
CDY03587	Canola	cytosol	23.74	58.93
Solyc07g021630.2.1	Tomato	plastid	53.72	58.49
CDY45047	Canola	peroxisome	23.26	58.08
CDY71328	Canola	cytosol, peroxisome, plastid	21.34	57.79
PGSC0003DMT400012709	Potato	mitochondrion	52.28	57.67
AT1G10070.1	Thale cress	mitochondrion	53.48	57.47
CDY31050	Canola	mitochondrion	51.8	57.29
Bra018831.1-P	Field mustard	cytosol	49.16	57.1
Bra018463.1-P	Field mustard	mitochondrion	51.56	57.03
Solyc04g077240.2.1	Tomato	mitochondrion	37.41	56.93
KXG40405	Sorghum	mitochondrion	55.16	56.93
Bra019963.1-P	Field mustard	cytosol	52.52	56.88
CDY28146	Canola	cytosol	48.92	56.82
PGSC0003DMT400030117	Potato	cytosol, nucleus, peroxisome	23.02	56.8
CDY20661	Canola	mitochondrion	51.32	56.76
KRH42003	Soybean	cytosol	45.56	56.72
KRH42010	Soybean	cytosol	48.2	56.46
CDY45046	Canola	mitochondrion	31.89	56.36
Bra031699.1-P	Field mustard	mitochondrion	51.32	56.32
CDY69091	Canola	mitochondrion, peroxisome, plastid	24.46	56.04
AT1G50110.1	Thale cress	cytosol	47.72	55.9
CDY03585	Canola	cytosol	47.96	55.71
CDY27928	Canola	cytosol	14.39	55.05
KRH49893	Soybean	cytosol	47.24	55.03
KRH49895	Soybean	cytosol	47.0	54.6
CDY31051	Canola	mitochondrion	37.89	54.3
AT1G50090.1	Thale cress	cytosol	47.72	54.22
CDY16426	Canola	cytosol	38.37	53.87
CDY03586	Canola	plastid	46.28	53.61
Bra039744.1-P	Field mustard	cytosol	36.45	53.52
CDY22959	Canola	cytosol	40.29	53.5
CDY22953	Canola	cytosol, peroxisome, plastid	12.95	53.47
CDY51693	Canola	cytosol	46.04	53.33
Bra014235.1-P	Field mustard	plastid	45.8	53.06
Bra022448.1-P	Field mustard	cytosol	45.8	53.06
KRH42008	Soybean	cytosol	46.76	52.7
Bra019964.1-P	Field mustard	cytosol	46.52	52.57
Bra001761.1-P	Field mustard	cytosol	45.32	52.5
CDY24619	Canola	cytosol	45.32	52.5
CDX82281	Canola	cytosol	45.08	52.22
Solyc12g088220.1.1	Tomato	plastid	47.24	51.84
KXG38964	Sorghum	plastid	53.96	50.79
CDY57927	Canola	mitochondrion	47.48	50.51
KRH52160	Soybean	endoplasmic reticulum, plasma membrane, plastid	55.64	50.22
Bra018464.1-P	Field mustard	mitochondrion	41.01	49.57
CDY20662	Canola	mitochondrion	40.53	48.99
AT3G19710.1	Thale cress	cytosol	41.49	48.87
CDY63741	Canola	mitochondrion	41.01	48.86
CDY57926	Canola	cytosol	52.52	48.24
CDY63740	Canola	cytosol	52.28	48.12
PGSC0003DMT400030118	Potato	mitochondrion	45.56	47.26
CDX99513	Canola	mitochondrion	6.71	45.9
AT1G10060.5	Thale cress	cytosol	47.24	41.04
CDY66609	Canola	cytosol	42.93	37.06
KXG26892	Sorghum	cytosol, mitochondrion, plastid	48.68	36.71
VIT_00s0558g00010.t01	Wine grape	plastid	8.63	26.28

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	UniProt:A0A1Z5SAL0	InterPro:Aminotrans_IV
InterPro:Aminotrans_IV_CS	InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824
GO:GO:0004084	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058
GO:GO:0009081	GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655
GO:GO:0052656	EnsemblPlants:OQU92960	ProteinID:OQU92960	ProteinID:OQU92960.1	PFAM:PF01063	PIRSF:PIRSF006468
ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF6	EnsemblPlantsGene:SORBI_3001G447500	SUPFAM:SSF56752	TIGRFAMs:TIGR01123
UniParc:UPI000B8BA324	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:72489003..72492325

Molecular Weight (calculated)

45908.8 Da

IEP (calculated)

8.817

GRAVY (calculated)

-0.345

Length

417 amino acids

Sequence
(BLAST)

001: MAASRVSWAG PWRWLRCVRD SRRVCNCAPL KSMHKSRARA WRQNAGGGGG GGGGGSLLPR RWQSSLPQLD HVDRSDEESG EIDWDKLGFG LTPTDYMYVT
101: RCSPEDRGDF PRGELCRYGN IELSPSSGVL NYAQGLFEGM KAYRRPDRSG YTLFRPEENA RRMQHGAERM CMPAPSVEQF VHAVKQTVLA NRRWVPPQGK
201: GALYLRPLLM GSGPILGLAP APEYTFLVYA APVGNYFKEG LAPINLVVHD EFHRAMPGGT GGVKTIANYA PVLRAQTDAK SKGFTDVLYL DSVHKRYLEE
301: VSSCNVFVVK GGVVATPATQ GTILPGITRK SVIELARDRG YKVEERLVSI DDLMSADEVF CTGTAVVVAP VSTVTYRGNK YEFRTGPDTV SQELYTTLTS
401: IQMGLAEDNK GWTVAVE

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.