Factsheet for PGSC0003DMT400012703

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
extracellular 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400088401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	PGSC0003DMT400088401	AT1G54060.1	21798944
AT1G10070.1	PGSC0003DMT400001405	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012709	Potato	mitochondrion	88.01	85.45
PGSC0003DMT400030117	Potato	cytosol, nucleus, peroxisome	34.6	75.15
VIT_18s0001g08450.t01	Wine grape	mitochondrion	67.57	64.08
VIT_18s0001g08430.t01	Wine grape	mitochondrion	67.03	63.57
Bra018463.1-P	Field mustard	mitochondrion	62.4	60.74
CDY31050	Canola	mitochondrion	62.4	60.74
AT1G10070.1	Thale cress	mitochondrion	64.03	60.57
Bra019963.1-P	Field mustard	cytosol	63.22	60.26
CDY20661	Canola	mitochondrion	61.85	60.21
GSMUA_Achr3P15170_001	Banana	mitochondrion	62.13	59.69
PGSC0003DMT400030118	Potato	mitochondrion	64.85	59.2
Bra031699.1-P	Field mustard	mitochondrion	60.22	58.16
GSMUA_Achr8P26500_001	Banana	mitochondrion	59.67	57.33
Os03t0231600-01	Rice	mitochondrion	62.13	54.94
TraesCS4B01G235400.3	Wheat	mitochondrion	59.67	54.89
TraesCS4D01G236800.1	Wheat	mitochondrion	59.67	54.89
PGSC0003DMT400055202	Potato	plastid	62.13	54.68
TraesCS4A01G059800.1	Wheat	mitochondrion	59.4	54.64
PGSC0003DMT400044068	Potato	plastid	62.13	54.42
OQU92960	Sorghum	mitochondrion	60.49	53.24
Zm00001d028303_P003	Maize	mitochondrion, plastid	59.67	52.14
CDY63740	Canola	cytosol	63.49	51.43
CDY57926	Canola	cytosol	63.22	51.1
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	60.49	50.11

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	EntrezGene:102603093
Gene3D:3.20.10.10	Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotrans_IV
InterPro:Aminotrans_IV_CS	InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824
GO:GO:0004084	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058
GO:GO:0009081	GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655
GO:GO:0052656	UniProt:M1A1M4	PFAM:PF01063	EnsemblPlantsGene:PGSC0003DMG400004949	PGSC:PGSC0003DMG400004949	EnsemblPlants:PGSC0003DMT400012703
PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF5	SUPFAM:SSF56752	TIGRFAMs:TIGR01123
UniParc:UPI0002948F84	RefSeq:XP_006356816.2	:	:	:	:

Description

Branched-chain-amino-acid aminotransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400004949]

Coordinates

chr4:+:66316677..66319860

Molecular Weight (calculated)

40413.4 Da

IEP (calculated)

5.560

GRAVY (calculated)

-0.133

Length

367 amino acids

Sequence
(BLAST)

001: MASSQSTLSP LFSAPPATSL QIAPTTSSDE ESAYIDWDNL GFQLMQTDYM YVTKCSDDGI FRQGQLNRYG NIQLSPSAGV LNYGQGLFEG TKAYRREDGR
101: VFLFRPEQNA IRMQIGAERM CMPSPSTDQF VEAVKQTALA NKRWIPPFGK GALYIRPLLI GSGPILGFAP APEYTFLVYA CPVGNYFKQG TAPLNLYVEE
201: DVHRASRGGA GGVKSITNYA PVLKAMKNAK ANGYSDVLYV DAVNKKYIEE VSSCNIFLVK GNVLSTPIAK GTILEGITRK SIIDIALDLG YTVEERLIEV
301: DELFSADEVF CTGTAVGVAP VGSITYKGQR IEYKISSDQL CKQFYSRLVG IQRGVIKDER NWIVEIE

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.