Factsheet for VIT_18s0001g08450.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g00720.t01
VIT_14s0066g01280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	VIT_09s0002g00720.t01	AT1G54060.1	21798944
AT1G10070.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g08430.t01	Wine grape	mitochondrion	82.69	82.69
PGSC0003DMT400012703	Potato	mitochondrion	64.08	67.57
CDY31050	Canola	mitochondrion	63.57	65.25
CDY20661	Canola	mitochondrion	63.57	65.25
Bra018463.1-P	Field mustard	mitochondrion	63.31	64.99
AT1G10070.1	Thale cress	mitochondrion	64.86	64.69
PGSC0003DMT400012709	Potato	mitochondrion	63.05	64.55
PGSC0003DMT400030117	Potato	cytosol, nucleus, peroxisome	28.17	64.5
Solyc07g021630.2.1	Tomato	plastid	63.57	64.23
Bra019963.1-P	Field mustard	cytosol	63.31	63.64
Solyc04g077240.2.1	Tomato	mitochondrion	44.7	63.14
Bra031699.1-P	Field mustard	mitochondrion	61.76	62.89
Solyc12g088220.1.1	Tomato	plastid	59.43	60.53
VIT_00s0657g00010.t01	Wine grape	mitochondrion, peroxisome	15.25	54.63
CDY57926	Canola	cytosol	64.08	54.63
CDY63740	Canola	cytosol	62.79	53.64
PGSC0003DMT400030118	Potato	mitochondrion	55.04	52.99
VIT_00s0558g00010.t01	Wine grape	plastid	10.08	28.47

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS
InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	ProteinID:CBI19346	ProteinID:CBI19346.3	UniProt:E0CNW8
EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004084	GO:GO:0008150	GO:GO:0008152
GO:GO:0008483	GO:GO:0008652	GO:GO:0009058	GO:GO:0009081	GO:GO:0009082	GO:GO:0009987
GO:GO:0016740	GO:GO:0052654	GO:GO:0052655	GO:GO:0052656	PFAM:PF01063	PIRSF:PIRSF006468
ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF5	SUPFAM:SSF56752	TIGRFAMs:TIGR01123	UniParc:UPI0001BE1769
ArrayExpress:VIT_18s0001g08450	EnsemblPlantsGene:VIT_18s0001g08450	EnsemblPlants:VIT_18s0001g08450.t01	RefSeq:XP_002285506	RefSeq:XP_002285506.2	:

Description

Branched-chain-amino-acid aminotransferase [Source:UniProtKB/TrEMBL;Acc:E0CNW8]

Coordinates

chr18:+:6907178..6910553

Molecular Weight (calculated)

42452.8 Da

IEP (calculated)

7.649

GRAVY (calculated)

-0.234

Length

387 amino acids

Sequence
(BLAST)

001: MISRRACFRN LILSLRTGST ASKLRSSNCF TSRTAPSLQP LVEPSPYSDD EYADVDWDNL GFGLIPTDYM YTTKCSEGGN FEEGHLSRYG NIELSPSAGV
101: LNYGQGLFEG TKAYRRENGR LCLFRPDQNA IRMQVGAERM CMPSPSIHHF VEAVKQTALA NKRWIPPPGK GSLYIRPLLM GSGPVLGLGP APECTFLIYA
201: SPVGNYFKQV SAPLNLFIDD EYHRATRGGA GGVKAITNYS PVLKAQSRAK SRGFSDVLFL DSVNKKNIEE VSSCNIFIVK DNVISTPATG GTILEGVTRK
301: SIIDIALDHG YQVKERCIPV EEVMEADEVF CTGTAVGVAA VGSITYQGKR VEYKSGDRCV SQELLSMYTG IQKGHIEDKK GWILEID

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.