Factsheet for PGSC0003DMT400030117

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400088401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	PGSC0003DMT400088401	AT1G54060.1	21798944
AT1G10070.1	PGSC0003DMT400001405	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012703	Potato	mitochondrion	75.15	34.6
PGSC0003DMT400012709	Potato	mitochondrion	75.74	33.86
VIT_18s0001g08430.t01	Wine grape	mitochondrion	65.09	28.42
CDY31050	Canola	mitochondrion	63.31	28.38
VIT_18s0001g08450.t01	Wine grape	mitochondrion	64.5	28.17
Bra018463.1-P	Field mustard	mitochondrion	62.72	28.12
CDY20661	Canola	mitochondrion	62.72	28.12
AT1G10070.1	Thale cress	mitochondrion	64.5	28.09
Bra019963.1-P	Field mustard	cytosol	62.72	27.53
Bra031699.1-P	Field mustard	mitochondrion	60.95	27.11
GSMUA_Achr3P15170_001	Banana	mitochondrion	59.76	26.44
PGSC0003DMT400030118	Potato	mitochondrion	60.95	25.62
TraesCS4B01G235400.3	Wheat	mitochondrion	58.58	24.81
GSMUA_Achr8P26500_001	Banana	mitochondrion	55.62	24.61
TraesCS4D01G236800.1	Wheat	mitochondrion	57.4	24.31
TraesCS4A01G059800.1	Wheat	mitochondrion	57.4	24.31
Os03t0231600-01	Rice	mitochondrion	58.58	23.86
CDY63740	Canola	cytosol	63.31	23.62
PGSC0003DMT400055202	Potato	plastid	57.4	23.26
CDY57926	Canola	cytosol	62.13	23.13
OQU92960	Sorghum	mitochondrion	56.8	23.02
Zm00001d028303_P003	Maize	mitochondrion, plastid	56.8	22.86
PGSC0003DMT400044068	Potato	plastid	56.21	22.67
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	56.8	21.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400030117	EnsemblPlantsGene:PGSC0003DMG401011540	Gene3D:3.20.10.10	Gene3D:3.30.470.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:Aminotransferase-like	ncoils:Coil	PANTHER:PTHR42825	PANTHER:PTHR42825:SF5
PGSC:PGSC0003DMG401011540	SEG:seg	SUPFAM:SSF56752	UniParc:UPI000294E5C0	UniProt:M1ATS2	MapMan:4.1.2.2.8.6
MapMan:4.1.3.2.4	MapMan:4.2.7.1	:	:	:	:

Description

Branched-chain-amino-acid aminotransferase [Source:PGSC_GENE;Acc:PGSC0003DMG401011540]

Coordinates

chr12:+:56074302..56077500

Molecular Weight (calculated)

18920.6 Da

IEP (calculated)

4.953

GRAVY (calculated)

-0.239

Length

169 amino acids

Sequence
(BLAST)

001: MDEAELRSGP ILGLAPAPEY TFLVYACPVG NYFKEGTSSL NLYVEEDLHR ASRGGAGGVK SITNYAPVLR AIKSAKDRGF SDVLYLDSIN KKYIEEVEER
101: LIEVEELNNV DEVFCTGTAV GIASVGSITY KGKRIEYKEK LTSKKLCSRL IEIQRGIIED KRDWIVEIY

Best Arabidopsis Sequence Match ( AT1G10060.3 )
(BLAST)

001: MFATKSCRDG NFEQGYLSRY GNIELNPAAG ILNYGQGLIE GMKAYRGEDG RVLLFRPELN AMRMKIGAER MCMHSPSVHQ FIEGVKQTVL ANRRWVPPPG
101: KGSLYLRPLL FGSGASLGVA AASEYTFLVF GSPVQNYFKE GTAALNLYVE EVIPRAYLGG TGGVKAISNY GPVLEVMRRA KSRGFSDVLY LDADTGKNIE
201: EVSAANIFLV KGNTIVTPAT SGTILGGITR KSIIEIALDL GYKVEERSVP VEELKEAEEV FCTGTAAGVA SVGSITFKNT RTEYKVGDGI VTQQLRSILV
301: GIQTGSIQDT KDWVLQIA

Arabidopsis Description

ATBCAT-1branched-chain amino acid transaminase 1 [Source:TAIR;Acc:AT1G10060]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.