Factsheet for PGSC0003DMT400012709

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400088401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	PGSC0003DMT400088401	AT1G54060.1	21798944
AT1G10070.1	PGSC0003DMT400001405	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012703	Potato	mitochondrion	85.45	88.01
Solyc04g077240.2.1	Tomato	mitochondrion	61.11	84.31
PGSC0003DMT400030117	Potato	cytosol, nucleus, peroxisome	33.86	75.74
VIT_18s0001g08430.t01	Wine grape	mitochondrion	65.08	63.57
VIT_18s0001g08450.t01	Wine grape	mitochondrion	64.55	63.05
Bra018463.1-P	Field mustard	mitochondrion	60.58	60.74
CDY31050	Canola	mitochondrion	60.58	60.74
AT1G10070.1	Thale cress	mitochondrion	62.17	60.57
Bra019963.1-P	Field mustard	cytosol	61.64	60.52
CDY20661	Canola	mitochondrion	60.05	60.21
PGSC0003DMT400030118	Potato	mitochondrion	63.76	59.95
Bra031699.1-P	Field mustard	mitochondrion	59.79	59.47
GSMUA_Achr3P15170_001	Banana	mitochondrion	58.47	57.85
GSMUA_Achr8P26500_001	Banana	mitochondrion	56.88	56.28
TraesCS4D01G236800.1	Wheat	mitochondrion	57.67	54.64
TraesCS4B01G235400.3	Wheat	mitochondrion	57.41	54.39
Os03t0231600-01	Rice	mitochondrion	58.99	53.73
TraesCS4A01G059800.1	Wheat	mitochondrion	56.61	53.63
PGSC0003DMT400055202	Potato	plastid	58.99	53.48
PGSC0003DMT400044068	Potato	plastid	58.47	52.74
OQU92960	Sorghum	mitochondrion	57.67	52.28
CDY63740	Canola	cytosol	61.9	51.66
CDY57926	Canola	cytosol	61.64	51.32
Zm00001d028303_P003	Maize	mitochondrion, plastid	56.88	51.19
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	56.88	48.53

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	EntrezGene:102602757
Gene3D:3.20.10.10	Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotrans_IV
InterPro:Aminotrans_IV_CS	InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824
GO:GO:0004084	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058
GO:GO:0009081	GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655
GO:GO:0052656	UniProt:M1A1M6	PFAM:PF01063	EnsemblPlantsGene:PGSC0003DMG400004951	PGSC:PGSC0003DMG400004951	EnsemblPlants:PGSC0003DMT400012709
PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF5	SUPFAM:SSF56752	TIGRFAMs:TIGR01123
UniParc:UPI000295B684	RefSeq:XP_006356815.1	SEG:seg	:	:	:

Description

Branched-chain-amino-acid aminotransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400004951]

Coordinates

chr4:+:66274506..66276857

Molecular Weight (calculated)

41578.9 Da

IEP (calculated)

8.158

GRAVY (calculated)

-0.164

Length

378 amino acids

Sequence
(BLAST)

001: MIRGAACFRK LFQSSAVSSK VAAKCYTAQA AVQPAIYSSD EESADIDWDN LGFNLMQTDY MYMTKCSDDG VFRKGQLNRY GNINLSPSAG VLNYGQGLFE
101: GTKAYRRDDG RVFLFRPEQN AIRMQIGAER MCMPSPTTDQ FVNAVKQTAL ANKRWIPPSG KGSLYIRPLL IGTGPILGLS PAPEYTFLVY ACPVGNYFKQ
201: GTAPLNLYVE EDVHRASRGG AGGVKSITNY APVLKAMKNA KANGYSDVLY LDAVNKKYIE EVSSCNIFLV KGNVLSTPIA KGTILEGITR KSIMDIAHDL
301: GYTVEERLIE ADELISADEV FCTGTAVGVA PVGSITYKGQ RIEYKISSDL SCKQFYSRLV GIQRGVIKDE RDWIVEIE

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.