Factsheet for Solyc12g088220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc03g122030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	Solyc03g122030.1.1	AT1G54060.1	21798944
AT1G10070.1	Solyc02g086840.2.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030118	Potato	mitochondrion	82.37	77.86
Solyc07g021630.2.1	Tomato	plastid	69.21	68.67
Solyc04g077240.2.1	Tomato	mitochondrion	47.37	65.69
VIT_18s0001g08450.t01	Wine grape	mitochondrion	60.53	59.43
VIT_18s0001g08430.t01	Wine grape	mitochondrion	60.0	58.91
Bra019963.1-P	Field mustard	cytosol	57.11	56.36
Solyc02g091970.2.1	Tomato	plastid	55.53	55.97
Bra018463.1-P	Field mustard	mitochondrion	55.26	55.7
CDY31050	Canola	mitochondrion	55.26	55.7
AT1G10070.1	Thale cress	mitochondrion	56.58	55.41
Bra031699.1-P	Field mustard	mitochondrion	54.74	54.74
CDY20661	Canola	mitochondrion	54.21	54.64
GSMUA_Achr3P15170_001	Banana	mitochondrion	53.68	53.4
GSMUA_Achr8P26500_001	Banana	mitochondrion	53.16	52.88
TraesCS4B01G235400.3	Wheat	mitochondrion	54.74	52.13
TraesCS4D01G236800.1	Wheat	mitochondrion	54.47	51.88
TraesCS4A01G059800.1	Wheat	mitochondrion	53.42	50.88
Os03t0231600-01	Rice	mitochondrion	54.21	49.64
Solyc03g043880.2.1	Tomato	plastid	53.16	48.33
CDY63740	Canola	cytosol	56.84	47.68
Zm00001d028303_P003	Maize	mitochondrion, plastid	52.63	47.62
CDY57926	Canola	cytosol	56.58	47.36
OQU92960	Sorghum	mitochondrion	51.84	47.24
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	54.21	46.5

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS
InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824	GO:GO:0004084
GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058	GO:GO:0009081
GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655	GO:GO:0052656
UniProt:K4DGP3	PFAM:PF01063	PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF5
SUPFAM:SSF56752	EnsemblPlantsGene:Solyc12g088220.1	EnsemblPlants:Solyc12g088220.1.1	TIGRFAMs:TIGR01123	UniParc:UPI000276A9C7	:

Description

Branched-chain-amino-acid aminotransferase [Source:UniProtKB/TrEMBL;Acc:K4DGP3]

Coordinates

chr12:+:63663328..63669235

Molecular Weight (calculated)

42137.7 Da

IEP (calculated)

9.321

GRAVY (calculated)

-0.209

Length

380 amino acids

Sequence
(BLAST)

001: MIIQRASSFQ RALFTSFEKK VGPRYFTAPA LTSAQPSTYR DYESRDIFDW DNLGFKLIQT DYMFMTKSSQ NGNFEKGKLN PYGNIELSPS AGVLNYGQGL
101: IEGTKAYRVD DGRIFLFRPQ ESGIRMQIGA KRMCMPSPSI QQFVDAVKLT TIANKRWIPP AGKGSLYIRP LLIGNGPILG IAPAPEYTFI VYACPVGNYL
201: RNGTQPLTLY VEEEHHRASQ GGAGGVKSIT NYAPVIKAIQ EAKDRGYSDV LYLDSVNKKY IEEVSAANIF LVKGKNISTP IASGTILEGV TRKSIIDIAH
301: DLGYKVEERL IEADELFSAD EVFCTGTALG VAPVGSITYK NKRINYKVSS DLISEQLNSR LVAIQKGIIE DKRGWIIEIK

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.