Factsheet for Solyc02g091970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 4

Predictors

GFP

MS/MS

Papers

plastid: 22679754

plastid: 20363867
plastid: 22908117
nucleus: 25464976

gfp PMID: 22679754

AS Kochevenko, AR Fernie

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0657g00010.t01	Wine grape	mitochondrion, peroxisome	23.34	81.48
PGSC0003DMT400055202	Potato	plastid	89.39	80.82
Os10t0549500-00	Rice	cytosol	56.76	78.1
Zm00001d045803_P001	Maize	cytosol, peroxisome, plastid	16.71	75.0
Solyc03g043880.2.1	Tomato	plastid	80.64	72.73
KRH77169	Soybean	nucleus, plastid	76.13	70.69
KRH28316	Soybean	nucleus, plastid	76.92	70.39
Bra017964.1-P	Field mustard	plastid	75.07	69.02
CDY68801	Canola	plastid	73.74	67.64
CDX83089	Canola	plastid	74.27	67.63
AT3G49680.1	Thale cress	plastid	73.74	67.31
Bra029966.1-P	Field mustard	plastid	73.74	67.15
GSMUA_Achr8P05090_001	Banana	plastid	71.88	65.46
Os03t0106400-01	Rice	plastid	70.03	65.19
CDY08161	Canola	endoplasmic reticulum	70.29	64.63
Zm00001d029848_P002	Maize	endoplasmic reticulum, plasma membrane	71.09	64.27
TraesCS4D01G356200.1	Wheat	plastid	69.5	63.9
KXG40405	Sorghum	mitochondrion	68.44	63.86
HORVU1Hr1G053320.7	Barley	plastid	69.5	63.75
TraesCS1A01G208500.1	Wheat	plastid	69.23	63.66
Os05t0558400-01	Rice	plastid	68.97	63.57
TraesCS5A01G531200.1	Wheat	plastid	68.97	63.41
TraesCS4B01G363000.1	Wheat	plastid	68.7	63.17
TraesCS1B01G222500.1	Wheat	plastid	68.44	62.93
TraesCS1D01G211700.1	Wheat	plastid	67.9	62.44
GSMUA_Achr3P15180_001	Banana	plastid	67.9	61.24
Zm00001d048539_P001	Maize	mitochondrion, plastid	67.64	58.09
Solyc04g077240.2.1	Tomato	mitochondrion	41.64	57.3
Solyc07g021630.2.1	Tomato	plastid	57.82	56.92
HORVU1Hr1G002790.1	Barley	endoplasmic reticulum	38.2	56.69
CDY54321	Canola	mitochondrion	73.74	56.5
Zm00001d002694_P004	Maize	endoplasmic reticulum	56.76	56.32
Solyc12g088220.1.1	Tomato	plastid	55.97	55.53
KXG38964	Sorghum	plastid	64.46	54.85
HORVU4Hr1G087100.5	Barley	mitochondrion	68.7	53.96
TraesCS2B01G426100.1	Wheat	plastid	58.62	53.9
TraesCS2A01G407900.1	Wheat	plastid	58.62	53.9
TraesCS2D01G405200.1	Wheat	plastid	58.36	53.66
Os04t0559400-01	Rice	plastid	56.76	52.2
HORVU2Hr1G096380.2	Barley	plastid	59.15	46.17
KXG26892	Sorghum	cytosol, mitochondrion, plastid	57.82	39.42

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS
InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824	GO:GO:0004084
GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058	GO:GO:0009081
GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655	GO:GO:0052656
UniProt:K4BCZ5	PFAM:PF01063	PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF3
SUPFAM:SSF56752	EnsemblPlantsGene:Solyc02g091970.2	EnsemblPlants:Solyc02g091970.2.1	TIGRFAMs:TIGR01123	UniParc:UPI0002767D53	SEG:seg

Description

Branched-chain-amino-acid aminotransferase [Source:UniProtKB/TrEMBL;Acc:K4BCZ5]

Coordinates

chr2:-:53178240..53184960

Molecular Weight (calculated)

40903.2 Da

IEP (calculated)

5.261

GRAVY (calculated)

-0.016

Length

377 amino acids

Sequence
(BLAST)

001: MEFILQFQKQ SHFTSYIGNS AINSGNSFRV ASPASDVASE LADIDWDNLG FGFMPTDYMY SMKCSQGENF SKGELQRFGN IELSPSAGIL NYGQGLFEGL
101: KAYRKHDGNI LLFRPEENAT RLKMGAERMC MPSPSVEQFV EAVKATVLAN ERWIPPPGKG SLYIRPLLMG SGAVLGLAPA PEYTFLIYVS PVGNYFKEGL
201: APINLVVETE MHRATPGGTG GVKTIGNYAA VLKAQSAAKA KGYSDVLYLD CVQKKYLEEV SSCNVFIVKG NLIVTPAIKG TILPGITRKS IIDVAISQGF
301: EVEERQVSVD ELLDADEVFC TGTAVVVSPV GSITHQGRRV TYGNDGVGLV SQQLYSALTS LQMGLSEDKM GWIVELK

Best Arabidopsis Sequence Match ( AT5G65780.1 )
(BLAST)

001: MERSAVASGF HRNYILCASR AATSTTRLHS LSSLRNFPSS SLRIRHCPSP ISSNFIVSEV SRNRRCDAVS SSTTDVTELA EIDWDKIDFG LKPTDYMYAM
101: KCSRDGEFSQ GQLQPFGNID INPAAGVLNY GQGLFEGLKA YRKQDGNILL FRPEENAIRM RNGAERMCMP SPTVEQFVEA VKTTVLANKR WIPPPGKGSL
201: YIRPLLMGTG AVLGLAPAPE YTFLIFVSPV GNYFKEGVAP INLIVETEFH RATPGGTGGV KTIGNYAAVL KAQSIAKAKG YSDVLYLDCL HKRYLEEVSS
301: CNIFIVKDNV ISTPEIKGTI LPGITRKSII EVARSQGFKV EERNVTVDEL VEADEVFCTG TAVVLSPVGS ITYKSQRFSY GEDGFGTVSK QLYTSLTSLQ
401: MGLSEDNMNW TVQLS

Arabidopsis Description

ATBCAT-5Branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) [Source:UniProtKB/TrEMBL;Acc:F4JXK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.