Factsheet for Solyc07g021630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22679754

plastid: 20363867

gfp PMID: 22679754

AS Kochevenko, AR Fernie

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc03g122030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10070.1	Solyc03g122030.1.1	AT1G54060.1	21798944
AT1G10070.1	Solyc02g086840.2.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077240.2.1	Tomato	mitochondrion	50.13	70.07
Solyc12g088220.1.1	Tomato	plastid	68.67	69.21
VIT_18s0001g08430.t01	Wine grape	mitochondrion	64.75	64.08
VIT_18s0001g08450.t01	Wine grape	mitochondrion	64.23	63.57
AT1G10070.1	Thale cress	mitochondrion	63.71	62.89
CDY31050	Canola	mitochondrion	61.88	62.86
Bra018463.1-P	Field mustard	mitochondrion	61.62	62.6
CDY20661	Canola	mitochondrion	60.84	61.8
Bra019963.1-P	Field mustard	cytosol	61.1	60.78
Bra031699.1-P	Field mustard	mitochondrion	58.22	58.68
GSMUA_Achr8P26500_001	Banana	mitochondrion	58.22	58.38
Solyc02g091970.2.1	Tomato	plastid	56.92	57.82
GSMUA_Achr3P15170_001	Banana	mitochondrion	57.44	57.59
TraesCS4D01G236800.1	Wheat	mitochondrion	58.49	56.14
TraesCS4B01G235400.3	Wheat	mitochondrion	58.22	55.89
TraesCS4A01G059800.1	Wheat	mitochondrion	56.66	54.39
OQU92960	Sorghum	mitochondrion	58.49	53.72
Os03t0231600-01	Rice	mitochondrion	57.7	53.25
Zm00001d028303_P003	Maize	mitochondrion, plastid	57.7	52.62
CDY57926	Canola	cytosol	61.1	51.54
CDY63740	Canola	cytosol	60.84	51.43
Solyc03g043880.2.1	Tomato	plastid	54.57	50.0
HORVU0Hr1G008950.3	Barley	cytosol, mitochondrion	56.66	48.98

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS
InterPro:Aminotransferase-like	InterPro:BCAT_family	InterPro:B_amino_transII	GO:GO:0003674	GO:GO:0003824	GO:GO:0004084
GO:GO:0008150	GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058	GO:GO:0009081
GO:GO:0009082	GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655	GO:GO:0052656
UniProt:K4CD19	PFAM:PF01063	PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF5
SUPFAM:SSF56752	EnsemblPlantsGene:Solyc07g021630.2	EnsemblPlants:Solyc07g021630.2.1	TIGRFAMs:TIGR01123	UniParc:UPI000276C9E5	:

Description

Branched-chain-amino-acid aminotransferase [Source:UniProtKB/TrEMBL;Acc:K4CD19]

Coordinates

chr7:-:20382871..20389446

Molecular Weight (calculated)

42679.3 Da

IEP (calculated)

8.332

GRAVY (calculated)

-0.176

Length

383 amino acids

Sequence
(BLAST)

001: MIQRAAPASI RKLFEFSSLR RQVDFRYYTA QVATSLRPCN YSADEVFPVV DWDKLGFGFT PTDYMYITKS CDVAGNFKQG QLNGYDNIQL SPSAGVLNYG
101: QGLFEGTKAY RQDNGGLSLF RPRENAIRMQ IGAERMCMPY PSTDQFVDAV KQTALANKRW IPPPGKGSLY IRPLLYGSGS ILGLAPAPEY TFLVYACPVG
201: NYFKEGTAPL NLYVDEEFHR ASRGGAGGVK SITNYAPVLR AIRNARERGF SDVLYLDSVN KKYIEEVSSC NIFLVKGKVI STPIACGTIL EGVTRKSIME
301: IAIDLGYQVE ERLIEADELI SADEVFCTGT AVGVAPVGSI TYKGQRIEYK IRSELVCKKL YSTLVGIQKR HIEDKRDWIV DIE

Best Arabidopsis Sequence Match ( AT1G10070.2 )
(BLAST)

001: MIKTITSLRK TLVLPLHLHI RTLQTFAKYN AQAASALREE RKKPLYQNGD DVYADLDWDN LGFGLNPADY MYVMKCSKDG EFTQGELSPY GNIQLSPSAG
101: VLNYGQAIYE GTKAYRKENG KLLLFRPDHN AIRMKLGAER MLMPSPSVDQ FVNAVKQTAL ANKRWVPPAG KGTLYIRPLL MGSGPILGLG PAPEYTFIVY
201: ASPVGNYFKE GMAALNLYVE EEYVRAAPGG AGGVKSITNY APVLKALSRA KSRGFSDVLY LDSVKKKYLE EASSCNVFVV KGRTISTPAT NGTILEGITR
301: KSVMEIASDQ GYQVVEKAVH VDEVMDADEV FCTGTAVVVA PVGTITYQEK RVEYKTGDES VCQKLRSVLV GIQTGLIEDN KGWVTDIN

Arabidopsis Description

BCAT2Branched-chain-amino-acid aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M439]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.