Factsheet for Os05t0558400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 17189339
nucleus: 19321431

msms PMID: 19321431 doi

MK Choudhary, D Basu, A Datta, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0549500-00	Rice	cytosol	66.01	98.54
TraesCS1D01G211700.1	Wheat	plastid	85.33	85.12
TraesCS1B01G222500.1	Wheat	plastid	85.09	84.88
TraesCS1A01G208500.1	Wheat	plastid	84.6	84.39
HORVU1Hr1G053320.7	Barley	plastid	83.86	83.45
Zm00001d029848_P002	Maize	endoplasmic reticulum, plasma membrane	82.89	81.3
Os03t0106400-01	Rice	plastid	77.02	77.78
VIT_00s0657g00010.t01	Wine grape	mitochondrion, peroxisome	20.05	75.93
KXG38964	Sorghum	plastid	78.97	72.91
GSMUA_Achr8P05090_001	Banana	plastid	70.17	69.32
KRH77169	Soybean	nucleus, plastid	68.46	68.97
Solyc02g091970.2.1	Tomato	plastid	63.57	68.97
KRH28316	Soybean	nucleus, plastid	69.44	68.93
AT3G49680.1	Thale cress	plastid	65.77	65.13
Bra017964.1-P	Field mustard	plastid	65.28	65.12
CDY68801	Canola	plastid	65.28	64.96
CDX83089	Canola	plastid	65.04	64.25
Bra029966.1-P	Field mustard	plastid	65.04	64.25
GSMUA_Achr3P15180_001	Banana	plastid	65.28	63.88
PGSC0003DMT400055202	Potato	plastid	64.06	62.83
CDY08161	Canola	endoplasmic reticulum	62.84	62.68
PGSC0003DMT400044068	Potato	plastid	63.33	61.81
Solyc03g043880.2.1	Tomato	plastid	63.08	61.72
Os03t0231600-01	Rice	mitochondrion	57.7	56.87
Os04t0559400-01	Rice	plastid	55.5	55.37
CDY54321	Canola	mitochondrion	66.01	54.88

Protein Annotations

KEGG:00270+2.6.1.42	KEGG:00280+2.6.1.42	KEGG:00290+2.6.1.42	KEGG:00770+2.6.1.42	KEGG:00966+2.6.1.42	Gene3D:3.20.10.10
Gene3D:3.30.470.10	MapMan:4.1.2.2.8.6	MapMan:4.1.3.2.4	MapMan:4.2.7.1	EntrezGene:4339583	ProteinID:AAT85092.1
InterPro:Aminotrans_IV	InterPro:Aminotrans_IV_CS	InterPro:Aminotransferase-like	ProteinID:BAF18209.1	ProteinID:BAS95291.1	InterPro:BCAT_family
InterPro:B_amino_transII	ProteinID:EEE64657.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004084	GO:GO:0008150
GO:GO:0008152	GO:GO:0008483	GO:GO:0008652	GO:GO:0009058	GO:GO:0009081	GO:GO:0009082
GO:GO:0009987	GO:GO:0016740	GO:GO:0052654	GO:GO:0052655	GO:GO:0052656	EnsemblPlantsGene:Os05g0558400
EnsemblPlants:Os05t0558400-01	PFAM:PF01063	PIRSF:PIRSF006468	ScanProsite:PS00770	PANTHER:PTHR42825	PANTHER:PTHR42825:SF3
UniProt:Q6AT43	SUPFAM:SSF56752	TIGRFAMs:TIGR01123	UniParc:UPI0000401B8F	RefSeq:XP_015639243.1	RefSeq:XP_015639244.1
RefSeq:XP_015639245.1	RefSeq:XP_015639246.1	SEG:seg	:	:	:

Description

Similar to Branched-chain-amino-acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3). (Os05t0558400-01)

Coordinates

chr5:+:27778798..27784774

Molecular Weight (calculated)

44214.3 Da

IEP (calculated)

7.241

GRAVY (calculated)

0.015

Length

409 amino acids

Sequence
(BLAST)

001: MEYGAATRGA LLAAAPLSGA RRSWLPLSSP PSPPSIQIQN RLYSISSLPL KARGVRRCEA SLASDYTKAS EVADLDWENL GFGIVQTDYM YITKCGQDGN
101: FSEGEMIPFG PIALNPSSGV LNYGQGLFEG LKAYRTTDDS ILLFRPEENA LRMRTGAERM CMPAPSVEQF VDAVKQTVLA NKRWVPPTGK GSLYIRPLLM
201: GSGAVLGLAP APEYTFIIFV SPVGNYFKEG LAPINLIVED KFHRATPGGT GSVKTIGNYA SVLMAQKIAK EKGYSDVLYL DAVHKKYLEE VSSCNIFVVK
301: GNVISTPAVK GTILPGITRK SIIDVALSKG FQVEERLVSV DELLEADEVF CTGTAVVVSP VGSITYQGKR VEYAGNKGVG VVSQQLYTSL TSLQMGQAED
401: WLVWTVQLS

Best Arabidopsis Sequence Match ( AT5G65780.1 )
(BLAST)

001: MERSAVASGF HRNYILCASR AATSTTRLHS LSSLRNFPSS SLRIRHCPSP ISSNFIVSEV SRNRRCDAVS SSTTDVTELA EIDWDKIDFG LKPTDYMYAM
101: KCSRDGEFSQ GQLQPFGNID INPAAGVLNY GQGLFEGLKA YRKQDGNILL FRPEENAIRM RNGAERMCMP SPTVEQFVEA VKTTVLANKR WIPPPGKGSL
201: YIRPLLMGTG AVLGLAPAPE YTFLIFVSPV GNYFKEGVAP INLIVETEFH RATPGGTGGV KTIGNYAAVL KAQSIAKAKG YSDVLYLDCL HKRYLEEVSS
301: CNIFIVKDNV ISTPEIKGTI LPGITRKSII EVARSQGFKV EERNVTVDEL VEADEVFCTG TAVVLSPVGS ITYKSQRFSY GEDGFGTVSK QLYTSLTSLQ
401: MGLSEDNMNW TVQLS

Arabidopsis Description

ATBCAT-5Branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) [Source:UniProtKB/TrEMBL;Acc:F4JXK3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.