Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0050g01120.t01 | Wine grape | cytosol | 27.27 | 9.63 |
| VIT_02s0025g00260.t01 | Wine grape | extracellular | 57.58 | 7.92 |
| VIT_15s0046g02000.t01 | Wine grape | extracellular, vacuole | 56.06 | 7.72 |
| VIT_11s0016g00720.t01 | Wine grape | extracellular, peroxisome, plastid | 54.55 | 7.3 |
| VIT_07s0005g02590.t01 | Wine grape | extracellular, vacuole | 46.97 | 6.65 |
| VIT_05s0077g01760.t01 | Wine grape | extracellular, vacuole | 45.45 | 6.59 |
| VIT_07s0005g00890.t01 | Wine grape | extracellular | 43.94 | 6.08 |
| VIT_02s0025g01330.t01 | Wine grape | extracellular | 37.88 | 5.59 |
| VIT_04s0044g01420.t01 | Wine grape | extracellular, golgi, vacuole | 40.91 | 5.22 |
| VIT_08s0007g07880.t01 | Wine grape | extracellular, plasma membrane | 31.82 | 4.37 |
| VIT_16s0050g01110.t01 | Wine grape | extracellular, golgi | 68.18 | 4.28 |
| VIT_05s0077g01740.t01 | Wine grape | nucleus | 3.03 | 0.85 |
| VIT_13s0139g00110.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_00s2630g00010 | EMBL:FN595716 | EnsemblPlants:VIT_00s2630g00010.t01 | EnsemblPlantsGene:VIT_00s2630g00010 | Gene3D:2.160.20.10 | InterPro:IPR012334 |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF17 | ProteinID:CCB50240 | ProteinID:CCB50240.1 |
| SUPFAM:SSF51126 | UniParc:UPI0002107F26 | UniProt:F6HDE5 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrUn:+:42545810..42546217
Molecular Weight (calculated)
7449.0 Da
IEP (calculated)
6.628
GRAVY (calculated)
-0.121
Length
66 amino acids
Sequence
(BLAST)
(BLAST)
1: MVALFFGTNL TDVLITGGNG ILNGQGQYWW DKFRAKRFND TRPYLIEIML SNLTLIDSPS PPGQMN
001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL
Arabidopsis Description
Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.